View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3449_high_10 (Length: 296)

Name: NF3449_high_10
Description: NF3449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3449_high_10
NF3449_high_10
[»] chr8 (2 HSPs)
chr8 (134-214)||(31939516-31939596)
chr8 (12-97)||(31939394-31939479)
[»] chr2 (1 HSPs)
chr2 (166-206)||(7580573-7580613)


Alignment Details
Target: chr8 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 134 - 214
Target Start/End: Original strand, 31939516 - 31939596
Alignment:
Q  134 cttctcaaaaatgtagaatttttatttcaatgattatggattgacacctttattttcataccactcatatactttttcatg 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31939516 cttctcaaaaatgtagaatttttatttcaatgattatggattgacacctttattttcataccactcttatactttttcatg 31939596  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 31939394 - 31939479
Alignment:
Q  12 taatattaccgaagatgaattgaaccaaggttaaaataggtcgaacatattgaattgaactatgtctatgataggttcggtcaata 97  Q
    ||||||||  ||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||    
T  31939394 taatattattgaagaagaattgaaccaaggttaaaataggttgaacatattaaattgaactatgtctatgattggttcggtcaata 31939479  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 7580613 - 7580573
Alignment:
Q  166 attatggattgacacctttattttcataccactcatatact 206  Q
    ||||||| |||||||| || |||||||||||||||||||||    
T  7580613 attatgggttgacaccctttttttcataccactcatatact 7580573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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