View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3449_high_19 (Length: 231)
Name: NF3449_high_19
Description: NF3449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3449_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 41142227 - 41142032
Alignment:
| Q |
18 |
acaagatcgcaccgccggtatgattcaatcccttttgctgtttccgttattcttctgaattctgaatattgtgtattttactttcatcatcgctatgttt |
117 |
Q |
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| T |
41142227 |
acaagatcgcaccgccggtatgattcaatccctttttctgtttccgttattcttctgaattctgaatattgtgtattttactttcatcatcgctatgttt |
41142128 |
T |
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| Q |
118 |
ttactcctcaaaattagggtgctttaattatagacttgaagaattaagtataggcattcttttcataaatctgtgaatatagcgttatgaggttcc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41142127 |
ttactcctcaaaattagggtgctttaattatagacttgatgaattaagtataggcattcttttcataaatctgtgaatatagcgttatgaggttcc |
41142032 |
T |
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