View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3449_high_3 (Length: 421)
Name: NF3449_high_3
Description: NF3449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3449_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 156 - 404
Target Start/End: Complemental strand, 663956 - 663708
Alignment:
| Q |
156 |
tagcatgacatatccttattcaacccatacaatttcttaaatctttcactggtgaagaaaatcagccacaactttgatgagttttttgcccttatcagat |
255 |
Q |
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| T |
663956 |
tagcatgacatatccttattcaacccatacaatttcttaaatctttcactggtgaagaaaatcagccacaactttgatgagttttttgcccttatcagat |
663857 |
T |
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| Q |
256 |
tcaggatggaccatataataacaatgatcttcatcttcttcttcaaaaaattcaacttccccattccaatgactccctttcacagcttcataatacaaaa |
355 |
Q |
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| T |
663856 |
tcaggatggaccatataataacaatgatcttcatcttcttcttcaaaaaattcaacttccccattccaatgactccttttcacagcttcataatacaaaa |
663757 |
T |
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| Q |
356 |
cagctctgtccctaaaacgatccttaccagcaacagtaacaagcatttt |
404 |
Q |
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| T |
663756 |
cagctctgtccctaaaacgatccttaccagcaacagtaacaagcatttt |
663708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 664118 - 664055
Alignment:
| Q |
4 |
aaaaacgacatagtagaaggacacgtaagacataaacaacatagtaaaaggtgctatatgtgtg |
67 |
Q |
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| T |
664118 |
aaaaacgacatagtaaaatgacacgtaagacgtagacaacatgataaaaggtgctatatgtgtg |
664055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 308
Target Start/End: Complemental strand, 47301960 - 47301902
Alignment:
| Q |
250 |
tcagattcaggatggaccatataataacaatgatcttcatcttcttcttcaaaaaattc |
308 |
Q |
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| T |
47301960 |
tcagattcaggatgaaagatatgataaacatgatcttcatcttcttcttcaaacaattc |
47301902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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