View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3449_high_5 (Length: 390)
Name: NF3449_high_5
Description: NF3449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3449_high_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 17 - 390
Target Start/End: Complemental strand, 46666916 - 46666537
Alignment:
| Q |
17 |
aaaaacaagcataatattctaacaatcaaaccaaaatgttaacagcttatatatacaatataatttgtagaaaaagcctatgcagaaattaaatgtatag |
116 |
Q |
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| T |
46666916 |
aaaaacaagcataatattctaacaatcaaaccaaaatgttaacagcttatatatacaatataatttgtagaaaaagcctatgcagaaattaaatgtatag |
46666817 |
T |
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| Q |
117 |
tagtaccttgcttatttctccattagcgacagttgaattgttgatgctcttaaaaagctctgctaatgcttcaacatcattgtgagagtctggaaaacca |
216 |
Q |
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| T |
46666816 |
tagtaccttgcttatttctccattagcgacagttgaattgttgatgctcttaaaaagctctgctaatgcttcaacatcattgtgagagtctggaaaacca |
46666717 |
T |
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| Q |
217 |
aaaatttgtacgcaagtttatttaaactacaaaactgtctagcaaaaataactcacaatct--------tatatatatcatagaaatatacaagaattaa |
308 |
Q |
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| T |
46666716 |
aaaatttgtacgcaagtttatttaaactacaaaactgtctagcaaaaataact--caatcttatatatatatatatatcatagaaatatacaagaattaa |
46666619 |
T |
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| Q |
309 |
ttaaagcttaattaacataatctaattggattaaccgatagacatacaagcagtctgtgatgcaagaattgccggatcctcc |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46666618 |
ttaaagcttaattaacataatctaattggattaaccgatagacatacaagcagtctgtgatgcaagaattgccggatcctcc |
46666537 |
T |
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