View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3449_high_8 (Length: 354)
Name: NF3449_high_8
Description: NF3449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3449_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 349
Target Start/End: Complemental strand, 34689885 - 34689553
Alignment:
| Q |
17 |
cagattccccatccaccttttgtccacaatgtatacaaatgcctccaaatgatccaggatgcatacatccatctacattcaaagatgatactccaacaat |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34689885 |
cagattccccatccaccttttgtccacaatgtatacaaatgcctccaaatgatccaggatgcatacatccatctacattcacagatgatactccaacaat |
34689786 |
T |
|
| Q |
117 |
taagtattaatatnnnnnnnnnnnnnnnnnnnnnnnnttacaacatttttaagacagagtgacaaagttgtatgtgattcataatcatattttcacaaac |
216 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34689785 |
taagtattaatatagagagagtgagagaaagagagagttacaacatttttaagacagagtgacaaagttgtatgtgattcataatcatattttcacaaac |
34689686 |
T |
|
| Q |
217 |
atttggaagagattttgcgtaatctaagagcctttagaaataaatttacggtattgttatacaatggactaaagaaaaggtagtatgaggtgtgaaatat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34689685 |
atttggaagagattttgcgtaatctaagagcctttagaaataaatttacggtattgttatacaatggactaaagaaaaggtagtatgaggtgtgaaatat |
34689586 |
T |
|
| Q |
317 |
ttgattgtgcatgcatcattagttcatttctct |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
34689585 |
ttgattgtgcatgcatcattagttcatttctct |
34689553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 17 - 349
Target Start/End: Complemental strand, 26987836 - 26987504
Alignment:
| Q |
17 |
cagattccccatccaccttttgtccacaatgtatacaaatgcctccaaatgatccaggatgcatacatccatctacattcaaagatgatactccaacaat |
116 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
26987836 |
cagattccccatccaccttttgtccacaatgtatacaaatgcctccaaatgatccaggatgcatacatccatctacattcacagatgatactccaacaat |
26987737 |
T |
|
| Q |
117 |
taagtattaatatnnnnnnnnnnnnnnnnnnnnnnnnttacaacatttttaagacagagtgacaaagttgtatgtgattcataatcatattttcacaaac |
216 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26987736 |
taagtattaatatagagagagtgagagaaagtgagagttacaacatttttaagacagagtgacaaagttgtatgtgattcataatcatattttcacaaat |
26987637 |
T |
|
| Q |
217 |
atttggaagagattttgcgtaatctaagagcctttagaaataaatttacggtattgttatacaatggactaaagaaaaggtagtatgaggtgtgaaatat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26987636 |
atttggaagagattttgcgtaatctaagagcctttagaaataaatttacggtattgttatacaatggactaaagaaaaggtagtatgaggtgtgaaatat |
26987537 |
T |
|
| Q |
317 |
ttgattgtgcatgcatcattagttcatttctct |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
26987536 |
ttgattgtgcatgcatcattagttcatttctct |
26987504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 172 - 349
Target Start/End: Original strand, 27077617 - 27077797
Alignment:
| Q |
172 |
agagtgacaaagttgtatgtgattcataatcatattttcacaaacatttggaagagattttgcgtaatctaagagcctttagaaataaatttacggtatt |
271 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||| || ||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
27077617 |
agagtgacaaaattgtatgtgattcataatcatattttcataaacatttgaaa-agattttgcataatgtaagagcctttagaaataaatttacggtatt |
27077715 |
T |
|
| Q |
272 |
gttatacaatggactaaagaaaaggtagtatgaggtgtgaaatatttgattg----tgcatgcatcattagttcatttctct |
349 |
Q |
| |
|
|||||| ||||||| |||||||| |||||||| ||||||| | |||||| || |||||||||||||||||||||||||| |
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|
| T |
27077716 |
gttataaaatggaccaaagaaaatgtagtatgtggtgtgagaaatttgagtgtgcatgcatgcatcattagttcatttctct |
27077797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 27077450 - 27077556
Alignment:
| Q |
17 |
cagattccccatccaccttttgtccacaatgtatacaaatgcctccaaatgatccaggatgcatacatccatctacattcaaagatgatactccaacaat |
116 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||| |||||| ||| ||||||| |
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|
| T |
27077450 |
cagattccccatccaccttttgcccacaatgtatacaaatgcctccaaatgatccagggtgcatgcatacatctacattcacagatgacactgcaacaat |
27077549 |
T |
|
| Q |
117 |
taagtat |
123 |
Q |
| |
|
||||||| |
|
|
| T |
27077550 |
taagtat |
27077556 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 27027312 - 27027235
Alignment:
| Q |
17 |
cagattccccatccaccttttgtccacaatgtatacaaatgcctccaaatgatccaggatgcatacatccatctacat |
94 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27027312 |
cagattccgcatccaccttttgcccacaatgtatacaaatgcctccaaatgatccaggatgcatacatccatctacat |
27027235 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 154 - 245
Target Start/End: Complemental strand, 27027201 - 27027111
Alignment:
| Q |
154 |
ttacaacatttttaagacagagtgacaaagttgtatgtgattcataatcatattttcacaaacatttggaagagattttgcgtaatctaaga |
245 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||| |||| ||| ||||||||| |||||||||| |
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| T |
27027201 |
ttacaacattttaaagacagagtgacaaagttgtatgttattcatattcatattttcacaaatattt-gaaaagattttgcataatctaaga |
27027111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 27027114 - 27027053
Alignment:
| Q |
288 |
aagaaaaggtagtatgaggtgtgaaatatttgattgtgcatgcatcattagttcatttctct |
349 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||| |
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|
| T |
27027114 |
aagaaaaggtagtatggggtgtgcgatatttgattgcgcatgcatcattagttcatttctct |
27027053 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 154 - 349
Target Start/End: Complemental strand, 30232785 - 30232591
Alignment:
| Q |
154 |
ttacaacatttttaagacagagtgacaaagttgtatgtgattcataatcatattttcacaaacatttggaagagattttgcgtaatctaagagcctttag |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||| |||||||||||||||||| |
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|
| T |
30232785 |
ttacaacatttttaagacagagtgacaaagttgtatgtgattcataataatattttcacaaacatttgaaa-agattttgcataatctaagagcctttag |
30232687 |
T |
|
| Q |
254 |
aaataaatttacggtattgttatacaatggactaaagaaaaggtagtatgaggtgtgaaatatttgattgtgcatgcatcattagttcatttctct |
349 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
30232686 |
aaatcaatttacggtattgttatacaatggactaaagaaaatgtagtatgaggtgtgagatatttgattgtgcatgcatcattagttcatttctct |
30232591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 172 - 349
Target Start/End: Complemental strand, 30230055 - 30229880
Alignment:
| Q |
172 |
agagtgacaaagttgtatgtgattcataatcatattttcacaaacatttggaagagattttgcgtaatctaagagcctttagaaataaatttacggtatt |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||| ||||||||||||| | | | |||||||| ||||||| |
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|
| T |
30230055 |
agagtgacaaagttgtatgtgattcataatcatattttcacaaaaatttcaaa-agattttgcataatctaagagccat-atatataaatttgcggtatt |
30229958 |
T |
|
| Q |
272 |
gttatacaatggactaaagaaaaggtagtatgaggtgtgaaatatttgattgtgcatgcatcattagttcatttctct |
349 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30229957 |
tttatacaatggaccaaagaaaaggtagtatgaggtgtgcgatatttgattgtgcatgcataattagttcatttctct |
30229880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 30230208 - 30230099
Alignment:
| Q |
17 |
cagattccccatccaccttttgtccacaatgtatacaaatgcctccaaatgatccaggatgcatacatccatctacattcaaagatgatactccaacaat |
116 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||| |
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|
| T |
30230208 |
cagattccccatcaaccttttgcccacaatgtatacaaatgcctccaaatgatccaggatgcgtacatccatctacattcacagatgatactgcaacaat |
30230109 |
T |
|
| Q |
117 |
taagtattaa |
126 |
Q |
| |
|
|||||||||| |
|
|
| T |
30230108 |
taagtattaa |
30230099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 30232923 - 30232808
Alignment:
| Q |
17 |
cagattccccatccaccttttgtccacaatgtatacaaatgcctccaaatgatccaggatg---catacatccatctacattcaaagatgatactccaac |
113 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||| ||| |
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|
| T |
30232923 |
cagattccccatccaccttttgcccacaatgtatacaaatgcctccaaatgatccaggatgcatcatacatccatctacattcacagttgatactgcaat |
30232824 |
T |
|
| Q |
114 |
aattaagtattaatat |
129 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
30232823 |
cattaagtaataatat |
30232808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 50174705 - 50174785
Alignment:
| Q |
17 |
cagattccccatccaccttttgtccacaatgtatacaaatgcctccaaatgatccaggatgcatacatccatctacattca |
97 |
Q |
| |
|
||||||||||||||| |||||| || ||| ||||||| || |||||||||| |||||||| ||||| ||||||| |||| |
|
|
| T |
50174705 |
cagattccccatccaacttttgcccgcaacgtatacacatctctccaaatgaaccaggatgtgtacatacatctaccttca |
50174785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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