View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3449_low_1 (Length: 534)
Name: NF3449_low_1
Description: NF3449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3449_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 94 - 401
Target Start/End: Complemental strand, 41343407 - 41343105
Alignment:
| Q |
94 |
agctgggattacaccttttgtggtggcagggattgaatttagcaagagaattgtaagtcacnnnnnnnacttgattattgctatctcatctcataaatta |
193 |
Q |
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| T |
41343407 |
agctgggattacaccttttgtggtggcagggattgaatttagcaagagaattgtaagtcactttttttacttgattattgctatctcat-----aaatta |
41343313 |
T |
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| Q |
194 |
tgaatctcattcttgtgtgttttttgtcttcaattttgaatatttgttacagattgctcaaaaaagatgtgagatgtgtggaggatcaggacttattttt |
293 |
Q |
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| T |
41343312 |
tgaatctcattcttgtatgttttttgtcttcaattttgaatatttgttacagattgctcaaaaaagatgtgagatgtgtggaggatcaggacttgttttt |
41343213 |
T |
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| Q |
294 |
agggataagaactattttcgttgtccagaatgtggtatgtttattgaattctcttaatcttgattataagcattaatatcatcattttgatcatgctata |
393 |
Q |
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| T |
41343212 |
agggataagaactattttcgttgtccagaatgtggtatgtttattgaattctcttaatcttgattataagcattaatatcatcattttgatcatgctata |
41343113 |
T |
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| Q |
394 |
gtgtaaaa |
401 |
Q |
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| T |
41343112 |
gtttaaaa |
41343105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 416 - 516
Target Start/End: Complemental strand, 41343118 - 41343018
Alignment:
| Q |
416 |
gctaaagtttaaaatgacacttagaaacttgctacttctcattgattttttggttctcaaatatttaaggtaagttacttgtgtgaaatcgattccctca |
515 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41343118 |
gctatagtttaaaatgacacttagaaacttgctacttctcattgattttttggttctcaaatatttaaggtaagttacttgtgtgaaatcgattccctca |
41343019 |
T |
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| Q |
516 |
t |
516 |
Q |
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| T |
41343018 |
t |
41343018 |
T |
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