View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3449_low_14 (Length: 250)
Name: NF3449_low_14
Description: NF3449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3449_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 40944921 - 40945160
Alignment:
| Q |
1 |
caaagaacactacgatcacataaaaaatgtctaataattttacctgatgaaatccagcttcctttgtgagtggcacacctaactcagccatacatgcttg |
100 |
Q |
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| T |
40944921 |
caaagaacactacgatcacataaaaaatgtctaataattttacctgatgaaatccagcttcctttgtgagtggcacacctaactcagccatacatgcttg |
40945020 |
T |
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| Q |
101 |
cattctatcatcactaccatacaaagcagggtacctctgaatacaacgatcttgcatcgtagccaactccacggccaatggataacttatagcaaatcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40945021 |
cattctatcatcactaccatacaaagcagggtacctctgaatacaacgatcttgcatcgtagccaactccacggccaatggataacttatagcaaatcca |
40945120 |
T |
|
| Q |
201 |
ccaccaccatatgccatagcatatgaaaaatgaatattct |
240 |
Q |
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| T |
40945121 |
ccaccaccatatgccatagcatatgaaaaatgaatattct |
40945160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 41 - 232
Target Start/End: Original strand, 22776347 - 22776538
Alignment:
| Q |
41 |
tacctgatgaaatccagcttcctttgtgagtggcacacctaactcagccatacatgcttgcattctatcatcactaccatacaaagcagggtacctctga |
140 |
Q |
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| T |
22776347 |
tacctggtgaaaccctgcttccttggttaatggaacacctagctcagccatgcaagcttgcattctatcatcactgccatacaaagcagggtaacgttga |
22776446 |
T |
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| Q |
141 |
atacaacgatcttgcatcgtagccaactccacggccaatggataacttatagcaaatccaccaccaccatatgccatagcatatgaaaaatg |
232 |
Q |
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| T |
22776447 |
atacaacgatcctgcatctttgcaagctccttagccaaagggtagcttatagcaaatcctccaccaccataagccatagcatacgagaaatg |
22776538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 83 - 240
Target Start/End: Complemental strand, 11092212 - 11092055
Alignment:
| Q |
83 |
ctcagccatacatgcttgcattctatcatcactaccatacaaagcagggtacctctgaatacaacgatcttgcatcgtagccaactccacggccaatgga |
182 |
Q |
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|||||||||||| ||||| || ||||||||| |||||||||| |||| ||||| |||||||| | ||||||||| | |||| | || ||||| ||| |
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| T |
11092212 |
ctcagccatacaagcttgaatcctatcatcagaaccatacaaaccaggatacctttgaatacacctatcttgcattttctccaaagcaacagccaaagga |
11092113 |
T |
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| Q |
183 |
taacttatagcaaatccaccaccaccatatgccatagcatatgaaaaatgaatattct |
240 |
Q |
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| T |
11092112 |
taacttatagcaaatccaccaccaccataagccatattataagaaaaataaatattct |
11092055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 41319822 - 41319877
Alignment:
| Q |
174 |
gccaatggataacttatagcaaatccaccaccaccatatgccatagcatatgaaaa |
229 |
Q |
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| T |
41319822 |
gccaaaggatagcttatagcaaatccaccaccaccataagccataccataggaaaa |
41319877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 240
Target Start/End: Original strand, 29612989 - 29613163
Alignment:
| Q |
66 |
gtgagtggcacacctaactcagccatacatgcttgcattctatcatcactaccatacaaagcagggtacctctgaatacaacgatcttgcatcgtagcca |
165 |
Q |
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||||| || ||||| | |||||||||||| ||||| || |||||||| |||||||| ||||||||| | |||||| | ||||||||| | ||| |
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| T |
29612989 |
gtgagaggaacaccaagctcagccatacaagcttgaatcctatcatctgacccatacaatttagggtacctttcaatacacctatcttgcattctctcca |
29613088 |
T |
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| Q |
166 |
actccacggccaatggataacttatagcaaatccaccaccaccatatgccatagcatatgaaaaatgaatattct |
240 |
Q |
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| T |
29613089 |
atgcaacagccaaaggataactaatagcaaatccaccaccaccataagccatattataagaaaaattaatattct |
29613163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 240
Target Start/End: Complemental strand, 2619400 - 2619342
Alignment:
| Q |
182 |
ataacttatagcaaatccaccaccaccatatgccatagcatatgaaaaatgaatattct |
240 |
Q |
| |
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|||||| ||||||||||||||||||||||| |||||| |||| ||||||| ||||||| |
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| T |
2619400 |
ataactaatagcaaatccaccaccaccataagccataccataagaaaaatatatattct |
2619342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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