View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3449_low_17 (Length: 236)
Name: NF3449_low_17
Description: NF3449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3449_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 48527705 - 48527485
Alignment:
| Q |
1 |
atttgagagcttcatcttacaaggttgaattttattagcgtaattctcatggattctaaaagagtatattgggcaatcattgtagcatggcttactttgt |
100 |
Q |
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| T |
48527705 |
atttgagagcttcatcttacaaggttgaattttattagcgtaattctcatggattctaaaagtgtatattgggcaatcattgtagcatggcttactttgt |
48527606 |
T |
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| Q |
101 |
tccaaggaagcatgatacttgtccagggtcaatttaattataaagaggctctcacaaaatcccttatattcttagaggcacaaagatcaggaaaactccc |
200 |
Q |
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| T |
48527605 |
tccaaggaagcatgatacttgtccagggtcaatttaattataaagaggctctcacaaaatcccttatattcttagaggcacaaagatcaggaaaactccc |
48527506 |
T |
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| Q |
201 |
tccaaataacagggttccttg |
221 |
Q |
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| T |
48527505 |
tccaaataacagggttccttg |
48527485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 47 - 221
Target Start/End: Complemental strand, 7222969 - 7222795
Alignment:
| Q |
47 |
tcatggattctaaaagagtatattgggcaatcattgtagcatggcttactttgttccaaggaagcatgatacttgtccagggtcaatttaattataaaga |
146 |
Q |
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| T |
7222969 |
tcatggataataaaagagtatatttggccatcattgcaacatgtcttgctttgttccaaggaaacatgatacttgttaagggtcaatttaactacaagga |
7222870 |
T |
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| Q |
147 |
ggctctcacaaaatcccttatattcttagaggcacaaagatcaggaaaactccctccaaataacagggttccttg |
221 |
Q |
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| T |
7222869 |
agctctcacaaaatctctcatcttcttagaggcgcaaagatcagggaaactccctcccagtaatagggtcccttg |
7222795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 57 - 215
Target Start/End: Original strand, 50303285 - 50303442
Alignment:
| Q |
57 |
taaaagagtatattgggcaatcattgtagcatggcttactttgttccaaggaagcatgatacttgtccagggtcaatttaattataaagaggctctcaca |
156 |
Q |
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||||| ||||||||||||| |||||| | ||| |||||||| |||||||||||| |||||||||| |||||||||||||||| ||||| |||| | | |
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| T |
50303285 |
taaaatagtatattgggca-tcattgcaacattacttactttattccaaggaagcgtgatacttgttaagggtcaatttaattacaaagaagctccaata |
50303383 |
T |
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| Q |
157 |
aaatcccttatattcttagaggcacaaagatcaggaaaactccctccaaataacagggt |
215 |
Q |
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| T |
50303384 |
aaatctcttattttcttagaggcacagaggtcagggaaccttcctctaaataatagggt |
50303442 |
T |
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