View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3449_low_2 (Length: 435)

Name: NF3449_low_2
Description: NF3449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3449_low_2
NF3449_low_2
[»] chr7 (16 HSPs)
chr7 (18-419)||(19202327-19202726)
chr7 (51-400)||(13251625-13251975)
chr7 (64-406)||(39269125-39269465)
chr7 (51-406)||(20578346-20578689)
chr7 (18-422)||(8315903-8316288)
chr7 (209-431)||(12389401-12389624)
chr7 (18-289)||(1586541-1586803)
chr7 (188-356)||(6038298-6038467)
chr7 (273-418)||(4985821-4985969)
chr7 (273-418)||(4989919-4990067)
chr7 (188-328)||(19155459-19155601)
chr7 (188-328)||(20754858-20755000)
chr7 (28-114)||(12389650-12389736)
chr7 (261-338)||(5107765-5107841)
chr7 (83-137)||(19155371-19155425)
chr7 (83-137)||(20754770-20754824)
[»] chr5 (17 HSPs)
chr5 (18-431)||(9834338-9834750)
chr5 (18-414)||(19053986-19054380)
chr5 (55-406)||(24319424-24319777)
chr5 (130-400)||(20547364-20547634)
chr5 (18-356)||(31598906-31599238)
chr5 (18-431)||(31213358-31213766)
chr5 (18-169)||(9826387-9826538)
chr5 (234-409)||(9826211-9826386)
chr5 (183-345)||(34489823-34489984)
chr5 (192-356)||(24263014-24263178)
chr5 (18-140)||(24263211-24263333)
chr5 (188-354)||(23771943-23772108)
chr5 (188-345)||(25571440-25571595)
chr5 (18-66)||(25405215-25405263)
chr5 (18-50)||(16783576-16783608)
chr5 (294-333)||(26120801-26120840)
chr5 (383-431)||(25405266-25405314)
[»] chr2 (12 HSPs)
chr2 (51-406)||(25923510-25923865)
chr2 (19-350)||(23008844-23009169)
chr2 (49-312)||(28922486-28922748)
chr2 (101-431)||(16815630-16815949)
chr2 (101-431)||(16854787-16855106)
chr2 (51-379)||(25533123-25533434)
chr2 (188-354)||(22565625-22565791)
chr2 (314-414)||(28919073-28919173)
chr2 (18-71)||(16815947-16816000)
chr2 (18-71)||(16855104-16855157)
chr2 (293-354)||(24522581-24522641)
chr2 (277-354)||(24527347-24527423)
[»] chr4 (10 HSPs)
chr4 (22-409)||(13130692-13131070)
chr4 (51-408)||(25097205-25097556)
chr4 (18-322)||(12608894-12609190)
chr4 (294-431)||(17109580-17109717)
chr4 (131-306)||(17109968-17110145)
chr4 (199-354)||(9054954-9055109)
chr4 (19-111)||(17110144-17110236)
chr4 (281-319)||(12608839-12608877)
chr4 (185-224)||(11933928-11933967)
chr4 (293-355)||(22216232-22216293)
[»] chr8 (13 HSPs)
chr8 (18-414)||(21320427-21320815)
chr8 (70-406)||(24721213-24721545)
chr8 (51-406)||(26828618-26828973)
chr8 (115-406)||(18571395-18571685)
chr8 (18-239)||(25231707-25231927)
chr8 (94-414)||(29761742-29762053)
chr8 (183-431)||(17099183-17099432)
chr8 (203-406)||(17511790-17511995)
chr8 (274-431)||(25231536-25231695)
chr8 (17-141)||(28857720-28857845)
chr8 (314-400)||(15175547-15175634)
chr8 (190-344)||(17964085-17964242)
chr8 (189-354)||(21230199-21230360)
[»] chr1 (4 HSPs)
chr1 (19-431)||(18828231-18828634)
chr1 (276-345)||(16115750-16115819)
chr1 (283-354)||(17610498-17610568)
chr1 (184-244)||(17610391-17610451)
[»] chr6 (11 HSPs)
chr6 (51-395)||(21844569-21844915)
chr6 (55-323)||(9870131-9870396)
chr6 (57-357)||(23843572-23843873)
chr6 (111-356)||(22570797-22571032)
chr6 (188-356)||(22525666-22525833)
chr6 (18-124)||(15455490-15455596)
chr6 (276-356)||(11176677-11176758)
chr6 (320-395)||(9871347-9871423)
chr6 (282-351)||(28588212-28588280)
chr6 (35-104)||(11176537-11176606)
chr6 (18-137)||(22525513-22525632)
[»] chr3 (16 HSPs)
chr3 (55-414)||(34275354-34275713)
chr3 (84-400)||(19913454-19913768)
chr3 (57-406)||(13586455-13586804)
chr3 (46-431)||(12770095-12770471)
chr3 (51-394)||(8766556-8766880)
chr3 (18-353)||(17142276-17142604)
chr3 (59-396)||(8771437-8771755)
chr3 (200-406)||(8146700-8146907)
chr3 (187-431)||(19166327-19166569)
chr3 (159-331)||(8880396-8880567)
chr3 (51-212)||(19578076-19578236)
chr3 (18-186)||(19166119-19166285)
chr3 (18-149)||(16227158-16227289)
chr3 (97-160)||(8878730-8878793)
chr3 (286-365)||(16226234-16226314)
chr3 (366-400)||(8880571-8880605)
[»] scaffold0072 (1 HSPs)
scaffold0072 (296-354)||(39130-39188)


Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 419
Target Start/End: Complemental strand, 19202726 - 19202327
Alignment:
Q  18 gctagtttacccttacattcaagagcacgatactttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtg 117  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||| |||  | |||||||||||| |||||||||||    
T  19202726 gctagtttacccttacattcaagagcacgatactttatggggcttgctagtgaaggtacttatatgataaccttctcttttccgaatatcataaccggtg 19202627  T
Q  118 agatttagagtcaaatatttccatatccattctaggttgttagatacttaaaatatttccaatacatattatgagtgttccatatgaatgctattattgc 217  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| ||||    
T  19202626 agattcagagccaaatatttccatatccattctaggttgttagatatttaaa-tatt-ccaatacatattatgagtgttccatatgaatgctatttttgc 19202529  T
Q  218 ttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaatttttctttggtacctagagcctttcaagccacccttttata 317  Q
    ||||||||||| |||||||||||| |||||| ||||| |||| ||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||    
T  19202528 ttgaatttgcggccgttctttacgaacgatcagttaggttatattacacacgagacaatttttctttggtacctagagcctttcaagccaccctattata 19202429  T
Q  318 ttcttattatcctttgtgaaaccactttcagcctccagac-aaaagtttatttctttattagtgatgaatcatgtcacagtcctacactttaattgcatc 416  Q
    |||||||| || ||||||||||||| || |||||| |||| |||| ||  |||| ||||||| || ||||||||||||| ||||||||||||| |||| |    
T  19202428 ttcttattgtcttttgtgaaaccac-ttgagcctctagacgaaaatttcttttcattattagcgacgaatcatgtcacattcctacactttaaatgcacc 19202330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 51 - 400
Target Start/End: Original strand, 13251625 - 13251975
Alignment:
Q  51 tttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtgagatttagagtcaaatatttccatatccattct 150  Q
    ||||| |||||||||||||||| || |||||| |||||| || ||||| |||||||||||||| ||||||||||||| ||||||||||||||| |||| |    
T  13251625 tttctagggcttgctagtgaagctacttatagaatcacctactctttttcgaatagcataacctgtgagatttagagccaaatatttccatattcattat 13251724  T
Q  151 aggttgttagatacttaaaatatttccaatacatattatgagtgttccatatgaatgctattattgcttgaatttgcgaccgttctttacggacgatcgg 250  Q
    ||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||| |     
T  13251725 aggttgttagatacttaaa-tatttccaatttatattatgagtgttccatatgaatgctatttttgcttgaatttgcggtcgttctttacggacgattga 13251823  T
Q  251 ttagcttatcttacacacgaagcaatttttctttggtacctagagcctttcaagccaccctt--ttatattcttattatcctttgtgaaaccactttcag 348  Q
    |||| |||| ||||||||||  |||||||||||||| |||| |||||||| || ||||||||  |||||||||||||||||||||||||||||| || ||    
T  13251824 ttaggttatattacacacgagacaatttttctttggcaccttgagccttttaatccaccctttattatattcttattatcctttgtgaaaccac-ttgag 13251922  T
Q  349 cctccagacaaaagttt-atttctttattagtgatgaatcatgtcacagtcct 400  Q
    ||||||||| ||| |||  ||||||||||||||||| ||||||||||||||||    
T  13251923 cctccagacgaaattttcttttctttattagtgatgtatcatgtcacagtcct 13251975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 64 - 406
Target Start/End: Original strand, 39269125 - 39269465
Alignment:
Q  64 ctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtgagatttagagtcaaatatttccatatccattctaggttgttagata 163  Q
    ||||| |||||| |||||  |||| || | |||||| ||||||||||||  ||||||||   || |||||||||||||||||||||||||||||||||||    
T  39269125 ctagtaaaggtacttataaaatcatcatctcttttctgaatagcataactagtgagattcgcagccaaatatttccatatccattctaggttgttagata 39269224  T
Q  164 cttaaaatatttccaatacatattatgagtgttccatatgaatgctattattgcttgaatttgcgaccgttctttacggacgatcggttagcttatctta 263  Q
    |||||| ||||||||||| |||||| ||||||||||||||||| ||||| ||||||||||||||  | |||||||||||| |||||||||| ||||  ||    
T  39269225 cttaaa-tatttccaatatatattacgagtgttccatatgaatactatttttgcttgaatttgcagctgttctttacggatgatcggttaggttattata 39269323  T
Q  264 cacacgaagcaatttttctttggtacctagagcctttcaagccacccttttatattcttattatcctttgtgaaaccactttcagcctccagac-aaaag 362  Q
    |||| ||  ||||||||| ||||||||| |||||||||||| || |||||  |||||||||||||||||||||||||| ||| | | | ||||| ||||     
T  39269324 cacaggagacaatttttcattggtaccttgagcctttcaagacaaccttt--tattcttattatcctttgtgaaaccaatttgaacatacagacgaaaat 39269421  T
Q  363 tttatttctttattagtgatgaatcatgtcacagtcctacactt 406  Q
    ||| ||||||||||||||| ||||| ||||||||||||||||||    
T  39269422 tttctttctttattagtgacgaatcgtgtcacagtcctacactt 39269465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 51 - 406
Target Start/End: Complemental strand, 20578689 - 20578346
Alignment:
Q  51 tttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtgagatttagagtcaaatatttccatatccattct 150  Q
    ||||| |||||||||||| | |||| |||||||||||||||| |||||| |||||||||| ||||||||||| |||| ||||||||| ||||||||||||    
T  20578689 tttctagggcttgctagtaatggtacttataggatcaccaactcttttctgaatagcata-ccggtgagattcagagccaaatattttcatatccattct 20578591  T
Q  151 aggttgttagatacttaaaatatttccaatacatattatgagtgttccatatgaatgctattattgcttgaatttgcgaccgttctttacggacgatcgg 250  Q
    |||| |||||||||| |||              |||||||| ||||||||||||||| ||||||||||||||||| || |||||| |||||||| | | |    
T  20578590 aggtagttagatactcaaa--------------tattatgaatgttccatatgaatgttattattgcttgaatttccgcccgttcgttacggacaaacag 20578505  T
Q  251 ttagcttatcttacacacgaagcaatttttctttggtacctagagcctttcaagccaccct-tttatattcttattatcctttgtgaaaccactttcagc 349  Q
    |||| |||| ||||||| ||  ||||||||||||||||||| ||||||||||||||||| | |||||||||||||||| ||||||||||||||||| |||    
T  20578504 ttaggttatattacacatgagtcaatttttctttggtaccttgagcctttcaagccaccatgtttatattcttattatactttgtgaaaccactttgagc 20578405  T
Q  350 ctccagac-aaaagttta-tttctttattagtgatgaatcatgtcacagtcctacactt 406  Q
    |||||||| |||  |||| ||||||||||||||| |||||| ||||||||||| |||||    
T  20578404 ctccagacgaaatatttattttctttattagtgacgaatcacgtcacagtcctgcactt 20578346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 422
Target Start/End: Original strand, 8315903 - 8316288
Alignment:
Q  18 gctagtttacccttacattcaagagcacgatactttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtg 117  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||| |||||||||||||  | ||||||  ||||||||||||||||    
T  8315903 gctagtttacccttacattcaagagaacgatactttctagggcttgctactgaaggtacttataggatcaccgtctcttttctaaatagcataaccggtg 8316002  T
Q  118 agatttagagtcaaatatttccatatccattctaggttgttagatacttaaaatatttccaatacatattatgagtgttccatatgaatgctattattgc 217  Q
    ||||||||||  |||||||||| ||||||||||||||||||||||| |||||  |||||||                     |||||||| |||| ||||    
T  8316003 agatttagagctaaatatttccttatccattctaggttgttagatagttaaatcatttcca--------------------ttatgaatgttatttttgc 8316082  T
Q  218 ttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaatttttctttggtacctagagcctttcaagccacccttttata 317  Q
    | |||||| ||  |||||||||||||| |||||| |  ||||  ||||||||| || ||||||||||||||||| ||| ||||||| |||||||||||||    
T  8316083 tcgaatttacggtcgttctttacggacaatcggtaatattataatacacacgaggc-atttttctttggtaccttgagtctttcaaaccacccttttata 8316181  T
Q  318 ttcttattatcctttgtgaaaccactttcagcctccagacaaaagtttatttct--tta-ttagtgatgaatcatgtcacagtcctacactttaattgca 414  Q
    |||| ||||||||||||||||||||||| ||||||||||   |||||| |||||  ||| |||| || ||||||||||||||||||  || |||| ||||    
T  8316182 ttctcattatcctttgtgaaaccactttgagcctccaga-tgaagtttctttcttgttacttagcgaggaatcatgtcacagtcctgaaccttaaatgca 8316280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 209 - 431
Target Start/End: Complemental strand, 12389624 - 12389401
Alignment:
Q  209 tattattgcttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaatttttctttggtacctagagcctttcaagccac 308  Q
    |||| |||||||||||| || |||||| |||||||||||| ||||| |||| ||||||||||  |||||||||||||||||||| |||||||||| ||||    
T  12389624 tatttttgcttgaattttcggccgttcattacggacgatcagttaggttatattacacacgagacaatttttctttggtacctatagcctttcaatccac 12389525  T
Q  309 ccttttatattcttattatcctttgtgaaaccactttcagcctccagac-aaaagtttatttctttattagtgatgaatcatgtcacagtcctacacttt 407  Q
    | | |||||||||||| |||||||||||||||||||| ||||||||||| |||| ||| ||||||||||||||| ||||||||||||    |||||||||    
T  12389524 cttgttatattcttatcatcctttgtgaaaccactttgagcctccagacaaaaaatttctttctttattagtgacgaatcatgtcactaaactacacttt 12389425  T
Q  408 aattgcatcctgtttcatatcact 431  Q
    || |||| ||||||| || |||||    
T  12389424 aaatgcaccctgtttgatttcact 12389401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 1586803 - 1586541
Alignment:
Q  18 gctagtttacccttacattcaagagcacgatactttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtg 117  Q
    ||||||||||| || |||||||||||||||||||||| ||||||||||| |||||||| || ||||||||||| | |||||| ||||| |||||||  ||    
T  1586803 gctagtttacctttgcattcaagagcacgatactttcaggggcttgctactgaaggtacttgtaggatcaccatctcttttctgaata-cataaccaatg 1586705  T
Q  118 agatttagagtcaaatatttccatatccattctaggttgttagatacttaaaatatttccaatacatattatgagtgttccatatgaatgctattattgc 217  Q
    |||||||||| ||||||||| || |||||||||| ||||||||||||||||| | ||||       ||||||||||||||||||||||| ||||| ||||    
T  1586704 agatttagagccaaatattt-caaatccattctatgttgttagatacttaaattctttc-------tattatgagtgttccatatgaattctatttttgc 1586613  T
Q  218 ttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaatttttctttggtac 289  Q
    |  ||||||    |||||||||| ||  ||||||||| |||| ||| | | || ||| ||||||||||||||    
T  1586612 tcaaatttgtagtcgttctttacagaaaatcggttaggttatattataaatgaggcactttttctttggtac 1586541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 188 - 356
Target Start/End: Original strand, 6038298 - 6038467
Alignment:
Q  188 atgagtgttccatatgaatgctattattgcttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaatttttc-tttgg 286  Q
    ||||||||| |||||| ||| |||| ||||| ||||||| | | ||||||||||||||||||||||  |||| ||||||| ||  ||||||||  |||||    
T  6038298 atgagtgtttcatatggatgttatttttgctcgaatttgtggctgttctttacggacgatcggttaagttatattacacatgagacaattttttatttgg 6038397  T
Q  287 tacctagagcctttcaagccacccttttatattcttattatcctttgtgaaaccactttcagcctccaga 356  Q
    |||||  |||||||||||||||||||||||||| |||||||||||||||||| |||||  ||||||||||    
T  6038398 taccttcagcctttcaagccacccttttatatttttattatcctttgtgaaatcacttaaagcctccaga 6038467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 273 - 418
Target Start/End: Original strand, 4985821 - 4985969
Alignment:
Q  273 caatttttctttggtacctagagcctttcaagccacccttttatattcttattatcctttgtgaaaccactttcagcctccagac-aaaagtttatttct 371  Q
    |||||||| |||||||||| ||| | || || ||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |||  ||||||| |    
T  4985821 caatttttatttggtaccttgagtcatttaaaccacccttttatattcttattatcctttgtgaaaccactttgaaccttcagacgaaatttttattttt 4985920  T
Q  372 -tta-ttagtgatgaatcatgtcacagtcctacactttaattgcatcct 418  Q
     ||| ||||||||||||||||||||||||||  ||||||| ||||||||    
T  4985921 gttacttagtgatgaatcatgtcacagtcctgaactttaaatgcatcct 4985969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 273 - 418
Target Start/End: Original strand, 4989919 - 4990067
Alignment:
Q  273 caatttttctttggtacctagagcctttcaagccacccttttatattcttattatcctttgtgaaaccactttcagcctccagac-aaaagtttatttct 371  Q
    |||||||| |||||||||| ||| | || || ||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |||  ||||||| |    
T  4989919 caatttttatttggtaccttgagtcatttaaaccacccttttatattcttattatcctttgtgaaaccactttgaaccttcagacgaaatttttattttt 4990018  T
Q  372 -tta-ttagtgatgaatcatgtcacagtcctacactttaattgcatcct 418  Q
     ||| ||||||||||||||||||||||||||  ||||||| ||||||||    
T  4990019 gttacttagtgatgaatcatgtcacagtcctgaactttaaatgcatcct 4990067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 188 - 328
Target Start/End: Original strand, 19155459 - 19155601
Alignment:
Q  188 atgagtgttccatatgaatgctattattgcttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaa--tttttctttg 285  Q
    ||||||||| |||||||||| |||| ||||| |||||||||  |||||||||||||||||||||||  |||| ||||||| ||  |||  |||||||||     
T  19155459 atgagtgtttcatatgaatgttatttttgctcgaatttgcggtcgttctttacggacgatcggttaagttatattacacatgagacaatttttttcttta 19155558  T
Q  286 gtacctagagcctttcaagccacccttttatattcttattatc 328  Q
    |||| | |  ||||| |||||| ||||||||||||||||||||    
T  19155559 gtacattggtcctttaaagccatccttttatattcttattatc 19155601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 188 - 328
Target Start/End: Original strand, 20754858 - 20755000
Alignment:
Q  188 atgagtgttccatatgaatgctattattgcttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaa--tttttctttg 285  Q
    ||||||||| |||||||||| |||| ||||| |||||||||  |||||||||||||||||||||||  |||| ||||||| ||  |||  |||||||||     
T  20754858 atgagtgtttcatatgaatgttatttttgctcgaatttgcggtcgttctttacggacgatcggttaagttatattacacatgagacaatttttttcttta 20754957  T
Q  286 gtacctagagcctttcaagccacccttttatattcttattatc 328  Q
    |||| | |  ||||| |||||| ||||||||||||||||||||    
T  20754958 gtacattggtcctttaaagccatccttttatattcttattatc 20755000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 12389736 - 12389650
Alignment:
Q  28 ccttacattcaagagcacgatactttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccg 114  Q
    |||||||||||||||||||||||||| ||||| ||||||||||| ||| |||||||||||||||| |||||| ||||| || |||||    
T  12389736 ccttacattcaagagcacgatactttatggggattgctagtgaaagtacttataggatcaccaactcttttctgaatatcacaaccg 12389650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 261 - 338
Target Start/End: Complemental strand, 5107841 - 5107765
Alignment:
Q  261 ttacacacgaagcaatttttctttggtacctagagcctttcaagccacccttttatattcttattatcctttgtgaaa 338  Q
    |||||||||| ||| |||||||||| | ||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  5107841 ttacacacgaggca-tttttctttgatgccttgagcctttctagccacccttttatattcttattatcctttgtgaaa 5107765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 19155371 - 19155425
Alignment:
Q  83 gatcaccaacccttttccgaatagcataaccggtgagatttagagtcaaatattt 137  Q
    |||||||| | |||||| ||||||||||| | ||||||||||||| |||||||||    
T  19155371 gatcaccatctcttttctgaatagcataatcagtgagatttagagccaaatattt 19155425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 20754770 - 20754824
Alignment:
Q  83 gatcaccaacccttttccgaatagcataaccggtgagatttagagtcaaatattt 137  Q
    |||||||| | |||||| ||||||||||| | ||||||||||||| |||||||||    
T  20754770 gatcaccatctcttttctgaatagcataatcagtgagatttagagccaaatattt 20754824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 431
Target Start/End: Complemental strand, 9834750 - 9834338
Alignment:
Q  18 gctagtttacccttacattcaagagcacgatactttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtg 117  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||| ||||||||||||||| ||    
T  9834750 gctaatttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactctttttcgaatagcataaccgatg 9834651  T
Q  118 agatttagagtcaaatatttccatatccattctaggttgttagatacttaaaatatttccaatacatattatgagtgttccatatgaatgctattattgc 217  Q
    ||||| |||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||| |    
T  9834650 agattcagagccaaatatttccatatacattctaggttgttagatacttaaa-tatttccaatatatattatgagtgatccatatgaatgctattattac 9834552  T
Q  218 ttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaatttttctttggtacctagagcctttcaagccacccttttata 317  Q
     ||||| || |  ||||| ||||||||||||| |||  |||| ||||||||||  |||||||||||||||||||| || |||||||||||||   |||||    
T  9834551 ctgaatgtgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttctttggtacctaaagtctttcaagccacctcgttata 9834452  T
Q  318 ttcttattatcctttgtgaaaccactttcagcctccagacaaaagtttatttctttattagtgatgaatcatgtcacagtcctacactttaattgcatcc 417  Q
     | |||||||||| |||||||||||||| ||||| |||||||||| |||||| ||||||||| | ||||||||||||| ||||||| ||||| |||| ||    
T  9834451 cttttattatcctatgtgaaaccactttgagccttcagacaaaagattatttttttattagttacgaatcatgtcacattcctacaatttaaatgcaccc 9834352  T
Q  418 tgtttcatatcact 431  Q
    ||||| || |||||    
T  9834351 tgtttgatttcact 9834338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 18 - 414
Target Start/End: Complemental strand, 19054380 - 19053986
Alignment:
Q  18 gctagtttacccttacattcaagagcacgatactttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||| |||||||||||||||||    
T  19054380 gctagtttacccttacattcaagagcacgatactttctggggcttgctagtgaaggtacttataggatcaccatctcttttctgaatagcataaccggtg 19054281  T
Q  118 agatttagagtcaaatatttccatatccattctaggttgttagatacttaaaatatttccaatacatattatgagtgttccatatgaatgctattattgc 217  Q
    |  |  | || |||| |||||||||| |||||||||| |||||||||||||| |||| |||||| ||||||||||||||||||  |||||||||||||||    
T  19054280 atttacatagccaaacatttccatattcattctaggtagttagatacttaaa-tatt-ccaatatatattatgagtgttccattagaatgctattattgc 19054183  T
Q  218 ttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaatttttctttggtacctagagcctttcaagccacccttttata 317  Q
    ||||||||||||| |||||||| |||||||||||||| |||| |||||  |||  | |||||||||||||||||| || |||||||| | | || |||||    
T  19054182 ttgaatttgcgactgttctttatggacgatcggttaggttatattacatgcgagaccatttttctttggtacctaaagtctttcaagacgctctgttata 19054083  T
Q  318 ttcttattatcctttgtgaaaccactttcagcctccagacaaaagtttatttctttattagtgatgaatcatgtcacagtcctacactttaattgca 414  Q
    ||||||||||||||| |||||||||||| | | ||||||| ||| ||| ||| ||||||||||| |||| |||||||||||||||||||||| ||||    
T  19054082 ttcttattatcctttatgaaaccactttgaacttccagacgaaaatttctttatttattagtgacgaatgatgtcacagtcctacactttaaatgca 19053986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 55 - 406
Target Start/End: Original strand, 24319424 - 24319777
Alignment:
Q  55 tggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtgagatttagagtcaaatatttccatatccattctaggt 154  Q
    |||||||||||||| |||||| ||||||||||| |||| |||||| |||||||||||||||||||||| |||| ||||||||| | ||||||||||||||    
T  24319424 tggggcttgctagtaaaggtacttataggatcaacaactcttttctgaatagcataaccggtgagattcagagccaaatattttcttatccattctaggt 24319523  T
Q  155 tgttagatacttaaaatatttccaatacata--ttatgagtgttccatatgaatgctattattgcttgaatttgcgaccgttctttacggacgatcggtt 252  Q
    ||||||||||||||| || || ||||| |||  |||  |||||| ||||||| ||||||| |||| ||||||||    |||||||||||||||||||| |    
T  24319524 tgttagatacttaaa-tactttcaatatatagattacaagtgttacatatgagtgctatttttgcatgaatttgttgtcgttctttacggacgatcggct 24319622  T
Q  253 agcttatcttacacacgaagcaatttttctttggtacctagagcctttcaagccaccctttt-atattcttattatcctttgtgaaaccactttcagcct 351  Q
    || ||||  ||||||||| |||||||| |||| |||||| || |||||||| |||||||||| ||||||||||||| ||||||||||||||||| |||||    
T  24319623 aggttattatacacacgaggcaatttt-ctttagtaccttgatcctttcaacccaccctttttatattcttattatgctttgtgaaaccactttgagcct 24319721  T
Q  352 ccagacaaaa-gtttatttctttattagtgatgaatcatgtcacagtcctacactt 406  Q
    ||| ||||||  ||| ||||||||||||||| ||||||||||| |||| |||||||    
T  24319722 ccaaacaaaatttttctttctttattagtgacgaatcatgtcatagtcttacactt 24319777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 130 - 400
Target Start/End: Original strand, 20547364 - 20547634
Alignment:
Q  130 aaatatttccatatccattctaggttgttagatacttaaaatatttccaatacatattatgagtgttccatatgaatgctattattgcttgaatttgcga 229  Q
    |||||| |||||||||||| ||||||||||||| | |||| ||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||     
T  20547364 aaatatctccatatccattgtaggttgttagatgcataaa-tatttccaatacatattatcagtgttccatatgaatgttatttttgcttgaatttgcgg 20547462  T
Q  230 ccgttctttacggacgatcggttagcttatcttacacacgaagcaatttttctttggtacctagagcctttcaagccacccttttatattcttattatcc 329  Q
    ||||||||||||||||||||||||  |||| ||||| |||| | |||||| ||||||||||||||| ||||||||||||||| ||||||| |||||||||    
T  20547463 ccgttctttacggacgatcggttaagttatattacaaacgaggaaattttactttggtacctagagtctttcaagccaccctattatatttttattatcc 20547562  T
Q  330 tttgtgaaaccactttcagcctccagac-aaaagtttatttctttattagtgatgaatcatgtcacagtcct 400  Q
    ||||||  |||||||| ||||||||||| |||| ||  ||||||||||||||| ||||||||||||||||||    
T  20547563 tttgtgggaccactttgagcctccagactaaaaattcttttctttattagtgacgaatcatgtcacagtcct 20547634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 18 - 356
Target Start/End: Original strand, 31598906 - 31599238
Alignment:
Q  18 gctagtttacccttacattcaagagcacgatactttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtg 117  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| |||||||||||||| | ||||||| ||||||| ||| ||||    
T  31598906 gctagtttacccttacatttaagagcacgatactttctggggcttgctactgatggtacttataggatcaccatctcttttccaaatagcaaaactggtg 31599005  T
Q  118 agatttagagtcaaatatttccatatccattctaggttg-ttagatacttaaaatatttccaatacatattatgagtgttccatatgaatgctattattg 216  Q
    ||||| |||| ||||||||| |||||||||||||||||| |||||||||| ||||| ||||||||     ||||||  ||||||||||||| |||| |||    
T  31599006 agattcagagccaaatattttcatatccattctaggttgtttagatactt-aaatacttccaata-----tatgagatttccatatgaatgttatttttg 31599099  T
Q  217 cttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaatttttctttggtacctagagcctttcaagccacccttttat 316  Q
    || ||||||||| ||||||||||| ||||||||||||| ||||  ||||  |  ||  ||||||||||||| ||  ||||||||| ||| |||| |||||    
T  31599100 ctcgaatttgcggccgttctttacagacgatcggttagattataataca-gctgagtcatttttctttggtgccatgagcctttctagcaacccatttat 31599198  T
Q  317 attcttattatcctttgtgaaaccactttcagcctccaga 356  Q
    ||| ||||||||||||||||||||| ||| ||||||||||    
T  31599199 attattattatcctttgtgaaaccaatttgagcctccaga 31599238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 431
Target Start/End: Complemental strand, 31213766 - 31213358
Alignment:
Q  18 gctagtttacccttacattcaagagcacgatactttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtg 117  Q
    |||||||||||||| || |||||||||  ||||||| |||||||||||| | |||||| |||||||||||||    ||||||  |||||| ||| |||||    
T  31213766 gctagtttacccttccactcaagagcataatactttatggggcttgctacttaaggtacttataggatcaccgtttcttttctaaatagcttaatcggtg 31213667  T
Q  118 agatttagagtcaaatatttccatatccattctaggttgtt-agatacttaaaatatttccaatacatattatgagtgttccatatgaatgctattattg 216  Q
    |||||||||  ||||||| ||| | || ||||||||||||| | ||||||||| | || |||||      ||||||||||| ||||||||| |||| |||    
T  31213666 agatttagaaccaaatatctccgtttc-attctaggttgtttatatacttaaattctt-ccaat------tatgagtgttctatatgaatgttatttttg 31213575  T
Q  217 cttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaatttttctttggtacctagagcctttcaagccacccttttat 316  Q
    |||||||||||| | ||||||||||||| ||  ||||| ||||  |||||||||  ||||||||||||||||||| |||||||||||||||||| |||||    
T  31213574 cttgaatttgcggcagttctttacggaccattcgttagattattatacacacgagacaatttttctttggtaccttgagcctttcaagccacccatttat 31213475  T
Q  317 attcttattatcctttgtgaaaccactttcagcctccagacaaaagtttatttc-ttta-ttagtgatgaatcatgtcacagtcctacactttaattgca 414  Q
    ||| ||| ||||||||||||||| ||||| |||||| |||| ||| ||| |||| | || ||||||||||||||||||||| ||||  ||||||| ||||    
T  31213474 atttttagtatcctttgtgaaactactttgagcctctagacgaaattttctttcatgtacttagtgatgaatcatgtcacaatcctgaactttaaatgca 31213375  T
Q  415 tcctgtttcatatcact 431  Q
     ||||||| || |||||    
T  31213374 ccctgtttgatttcact 31213358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 9826538 - 9826387
Alignment:
Q  18 gctagtttacccttacattcaagagcacgatactttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||  |||||||||||||| ||    
T  9826538 gctagtttacccttacattcaagagcacgatactttctggggcttgttagtgaaggtacttataggatcaccaactcttttttgaatagcataaccgatg 9826439  T
Q  118 agatttagagtcaaatatttccatatccattctaggttgttagatacttaaa 169  Q
    ||||| | || ||||||||| |||||||||| ||||||||||||||||||||    
T  9826438 agattcaaagccaaatattttcatatccattttaggttgttagatacttaaa 9826387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 234 - 409
Target Start/End: Complemental strand, 9826386 - 9826211
Alignment:
Q  234 tctttacggacgatcggttagcttatcttacacacgaagcaatttttctttggtacctagagcctttcaagccacccttttatattcttattatcctttg 333  Q
    |||||||||||||||| |||  |||| |||||||||| | ||||||||||||||||||| || |||||||||||||   ||||| | |||||||||| ||    
T  9826386 tctttacggacgatcgattaagttatattacacacgaggaaatttttctttggtacctaaagtctttcaagccacctcgttatacttttattatcctatg 9826287  T
Q  334 tgaaaccactttcagcctccagacaaaagtttatttctttattagtgatgaatcatgtcacagtcctacactttaa 409  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||| ||||| ||||||| ||||||| |||||    
T  9826286 tgaaaccactttgagcctccagacaaaagattatttctttattagtgacgaatcgtgtcacaatcctacaatttaa 9826211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 183 - 345
Target Start/End: Complemental strand, 34489984 - 34489823
Alignment:
Q  183 atattatgagtgttccatatgaatgctattattgcttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaatttttct 282  Q
    |||||||||||||||||||||||||||||  |||   ||||||||| | |||||||||||||||||| |||  ||||  ||||||||| ||| |||||||    
T  34489984 atattatgagtgttccatatgaatgctatctttgtccgaatttgcggcagttctttacggacgatcgattaagttataatacacacgaggca-tttttct 34489886  T
Q  283 ttggtacctagagcctttcaagccacccttttatattcttattatcctttgtgaaaccacttt 345  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||| ||| ||||||||||||    
T  34489885 ttggtaccttgagccttttaagccacccttttatattcttattatcatttttgaaaccacttt 34489823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 192 - 356
Target Start/End: Complemental strand, 24263178 - 24263014
Alignment:
Q  192 gtgttccatatgaatgctattattgcttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaattttt-ctttggtacc 290  Q
    ||||||||||||||| || || ||||| |||||| ||  ||||||||||  |||||| ||||  |||| ||||||||||  |||||||| ||| ||||      
T  24263178 gtgttccatatgaatactgtttttgctcgaatttacggtcgttctttacatacgatcagttaagttatattacacacgagacaattttttcttaggtagt 24263079  T
Q  291 tagagcctttcaagccacccttttatattcttattatcctttgtgaaaccactttcagcctccaga 356  Q
    | |||  |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  24263078 ttgagattttcaagccacccttt-atattcttattatcctttgtgaaaccactttgagcctccaga 24263014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 24263333 - 24263211
Alignment:
Q  18 gctagtttacccttacattcaagagcacgatactttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtg 117  Q
    |||| |||||||||||||| ||||||||||||  |  ||| | || ||| |||||||| | ||| |||||||| | |||||| |||||||||||||||||    
T  24263333 gctaatttacccttacatttaagagcacgataactattggaggttactactgaaggtactcatatgatcaccatctcttttctgaatagcataaccggtg 24263234  T
Q  118 agatttagagtcaaatatttcca 140  Q
    |||||||||| ||||||||||||    
T  24263233 agatttagagccaaatatttcca 24263211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 188 - 354
Target Start/End: Complemental strand, 23772108 - 23771943
Alignment:
Q  188 atgagtgttccatatgaatgctattattgcttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaatttttctttggt 287  Q
    ||||||||||||||||| ||||||| |||||  |||||| |  |||||||||||||||||||| |   | ||  ||  |||||  ||||| || |||| |    
T  23772108 atgagtgttccatatgattgctatttttgctcaaatttgaggtcgttctttacggacgatcgggtttgtcataatatgcacgagacaattattttttgat 23772009  T
Q  288 acctagagcctttcaagccacccttttatattcttattatcctttgtgaaaccactttcagcctcca 354  Q
    |||| |||||||||||||||| || | | ||||||||||||||||||||||||||||| | ||||||    
T  23772008 accttgagcctttcaagccacactgt-acattcttattatcctttgtgaaaccactttgaacctcca 23771943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 188 - 345
Target Start/End: Original strand, 25571440 - 25571595
Alignment:
Q  188 atgagtgttccatatgaatgctattattgcttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaatttttctttggt 287  Q
    |||||||||||||||||||| |||| ||||| |||||| |   ||||||||| ||||||||||| |  |||  ||||||| ||   | |||||  || ||    
T  25571440 atgagtgttccatatgaatgttatttttgctcgaattttctgtcgttctttaaggacgatcggtcatgttaaattacacatgatatatttttt--ttagt 25571537  T
Q  288 acctagagcctttcaagccacccttttatattcttattatcctttgtgaaaccacttt 345  Q
    |||| ||||||||||||||| |   |||| ||||||||||||||||||||||| ||||    
T  25571538 acctcgagcctttcaagccatctaattattttcttattatcctttgtgaaaccccttt 25571595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 25405215 - 25405263
Alignment:
Q  18 gctagtttacccttacattcaagagcacgatactttctggggcttgcta 66  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  25405215 gctagtttacccctacattcaagagcacgatactttttggggcttgcta 25405263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 16783576 - 16783608
Alignment:
Q  18 gctagtttacccttacattcaagagcacgatac 50  Q
    |||||||||||||||||||||||||||||||||    
T  16783576 gctagtttacccttacattcaagagcacgatac 16783608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 333
Target Start/End: Complemental strand, 26120840 - 26120801
Alignment:
Q  294 agcctttcaagccacccttttatattcttattatcctttg 333  Q
    |||||||||||||||| |||||||||||||||||| ||||    
T  26120840 agcctttcaagccaccgttttatattcttattatcttttg 26120801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 431
Target Start/End: Original strand, 25405266 - 25405314
Alignment:
Q  383 gaatcatgtcacagtcctacactttaattgcatcctgtttcatatcact 431  Q
    ||||||||||||||||||||||||||| |||| ||| ||| || |||||    
T  25405266 gaatcatgtcacagtcctacactttaaatgcaccctatttgatttcact 25405314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 51 - 406
Target Start/End: Complemental strand, 25923865 - 25923510
Alignment:
Q  51 tttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtgagatttagagtcaaatatttccatatccattct 150  Q
    ||||| ||||||||||||||||||| |||||| |||||| || ||||||| ||||||||||||||||||||| |||| ||||| ||| ||||||||||||    
T  25923865 tttctagggcttgctagtgaaggtacttatagaatcacctactcttttccaaatagcataaccggtgagattcagagccaaattttttcatatccattct 25923766  T
Q  151 aggttgttagatacttaaaatatttccaatacatattatgagtgttccatatgaatgctattattgcttgaatttgcgaccgttctttacggacgatcgg 250  Q
    ||||||||||||||||||| |||||| ||  |||||||||||||||||||||||||| |||| |||||||||||| || ||||||||||| |||||||||    
T  25923765 aggttgttagatacttaaa-tatttctaaatcatattatgagtgttccatatgaatgttatttttgcttgaattttcggccgttctttactgacgatcgg 25923667  T
Q  251 ttagcttatcttacacacgaagcaatttttctttggtacctagagcctttcaagccacccttttatattcttattatcctttgtgaaaccactttcagcc 350  Q
    |||  |||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||| ||||| ||||    
T  25923666 ttaagttatattacacacgaggcaatttttctttggtacctagagcctttcaagccaccctattatattctatttatcctttgtgaaactactttgagcc 25923567  T
Q  351 tccagacaaaagttta-tttctttattagtgatgaatcatgtcacagtcctacactt 406  Q
    || |||| ||| |||| ||||| ||||||||| |||||||||||||||||| |||||    
T  25923566 tctagacgaaattttattttctatattagtgacgaatcatgtcacagtcctgcactt 25923510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 350
Target Start/End: Original strand, 23008844 - 23009169
Alignment:
Q  19 ctagtttacccttacattcaagagcacgatactttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtga 118  Q
    |||| |||||||| ||||||||| ||||||||||| |||||||||||| |||||||| |||||||||||| | | |||||  |||||||||||||| |||    
T  23008844 ctagcttaccctttcattcaagaacacgatactttatggggcttgctactgaaggtacttataggatcactatctcttttatgaatagcataaccgttga 23008943  T
Q  119 gatttagagtcaaatatttccatatccattctaggttgttagatacttaaaatatttccaatacatattatgagtgttccatatgaatgctattattgct 218  Q
    |||||||||||||||||||||| || |||||||| |||||||||||||||| | | ||       |||||||||||||  ||| |||||||||| |||||    
T  23008944 gatttagagtcaaatatttcca-attcattctagattgttagatacttaaattctgtc-------tattatgagtgttttatacgaatgctatttttgct 23009035  T
Q  219 tgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagca--atttttctttggtacctagagcctttcaagccacccttttat 316  Q
     ||||||||| ||||| ||||||||||||||||||  ||||  ||||||||| |||  |||||| | |||||||| ||||||||||||||||  ||||||    
T  23009036 cgaatttgcggccgttttttacggacgatcggttaaattataatacacacgatgcatcatttttatctggtaccttgagcctttcaagccacaattttat 23009135  T
Q  317 attcttattatcctttgtgaaaccactttcagcc 350  Q
    ||||||||||||||||||||||||||||| ||||    
T  23009136 attcttattatcctttgtgaaaccactttgagcc 23009169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 49 - 312
Target Start/End: Complemental strand, 28922748 - 28922486
Alignment:
Q  49 actttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtgagatttagagtcaaatatttccatatccatt 148  Q
    ||||||| |||||||||||| || ||| |||||||||||||| | |||||| |||||||||||| ||||||||| | || ||||||||||||||||||||    
T  28922748 actttctagggcttgctagtaaatgtacttataggatcaccatctcttttctgaatagcataactggtgagattcaaagccaaatatttccatatccatt 28922649  T
Q  149 ctaggttgttagatacttaaaatatttccaatacatattatgagtgttccatatgaatgctattattgcttgaatttgcgaccgttctttacggacgatc 248  Q
     |||||||||| ||||||||| || ||| |||| | |||||||||||||||||||||||||||| |||||||||||| ||  ||||||||||||||||||    
T  28922648 ataggttgttatatacttaaa-tacttctaatatacattatgagtgttccatatgaatgctatttttgcttgaatttacggtcgttctttacggacgatc 28922550  T
Q  249 ggttagcttatcttacacacgaagcaatttttctttggtacctagagcctttcaagccaccctt 312  Q
    | |||| ||||  ||||||||| ||| |||||||||||||||| ||||||| |||||| |||||    
T  28922549 gattaggttattatacacacgaggcattttttctttggtaccttgagccttccaagccgccctt 28922486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 101 - 431
Target Start/End: Complemental strand, 16815949 - 16815630
Alignment:
Q  101 gaatagcataaccggtgagatttagagtcaaatatttccatatccattctaggttgttagatacttaaaatatttccaatacatattatgagtgttccat 200  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||  |||    || | ||||||       ||||||||| |||||    
T  16815949 gaatagcataaccggtgagatttagagccaaatattttcatatccattctaggttgtttcata----aattttttcca-------ttatgagtgctccat 16815861  T
Q  201 atgaatgctattattgcttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaatttttctttggtacctagagccttt 300  Q
    ||||||| |||| ||||| ||||||||| ||||||||||||||||||||||||| ||||  |||||| ||    | ||||||||||||||| ||||||||    
T  16815860 atgaatgttatttttgctcgaatttgcggccgttctttacggacgatcggttagattataatacacatga---cacttttctttggtaccttgagccttt 16815764  T
Q  301 caagccacccttttatattcttattatcctttgtgaaaccactttcagcctccagacaaaagtttatttct--tta-ttagtgatgaatcatgtcacagt 397  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||| ||| |||||  ||| ||||||| | ||||||||||| |    
T  16815763 caagccacccttttatattcatattatcctttgtgaaaccactttgagcctccagataaaaatttctttcttgttacttagtgaaggatcatgtcacaat 16815664  T
Q  398 cctacactttaattgcatcctgtttcatatcact 431  Q
    |||  ||||||| |||| ||||||| || |||||    
T  16815663 cctgaactttaaatgcaccctgtttgatttcact 16815630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 101 - 431
Target Start/End: Complemental strand, 16855106 - 16854787
Alignment:
Q  101 gaatagcataaccggtgagatttagagtcaaatatttccatatccattctaggttgttagatacttaaaatatttccaatacatattatgagtgttccat 200  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||  |||    || | ||||||       ||||||||| |||||    
T  16855106 gaatagcataaccggtgagatttagagccaaatattttcatatccattctaggttgtttcata----aattttttcca-------ttatgagtgctccat 16855018  T
Q  201 atgaatgctattattgcttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaatttttctttggtacctagagccttt 300  Q
    ||||||| |||| ||||| ||||||||| ||||||||||||||||||||||||| ||||  |||||| ||    | ||||||||||||||| ||||||||    
T  16855017 atgaatgttatttttgctcgaatttgcggccgttctttacggacgatcggttagattataatacacatga---cacttttctttggtaccttgagccttt 16854921  T
Q  301 caagccacccttttatattcttattatcctttgtgaaaccactttcagcctccagacaaaagtttatttct--tta-ttagtgatgaatcatgtcacagt 397  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||| ||| |||||  ||| ||||||| | ||||||||||| |    
T  16854920 caagccacccttttatattcatattatcctttgtgaaaccactttgagcctccagataaaaatttctttcttgttacttagtgaaggatcatgtcacaat 16854821  T
Q  398 cctacactttaattgcatcctgtttcatatcact 431  Q
    |||  ||||||| |||| ||||||| || |||||    
T  16854820 cctgaactttaaatgcaccctgtttgatttcact 16854787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 51 - 379
Target Start/End: Complemental strand, 25533434 - 25533123
Alignment:
Q  51 tttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtgagatttagagtcaaatatttccatatccattct 150  Q
    ||||| ||||||||||||||||||| |||||| |||||| || ||||| ||||   |||||||||||||||| |||| |||||||||||||||||||| |    
T  25533434 tttctagggcttgctagtgaaggtacttatagaatcacctactctttttcgaa---cataaccggtgagattcagagccaaatatttccatatccattat 25533338  T
Q  151 aggttgttagatacttaaaatatttccaatacatattatgagtgttccatatgaatgctattattgcttgaatttgcgaccgttctttacggacgatcgg 250  Q
    | |||||||||||||| ||||| |||||||  ||||||||||||||||||||||||| |||| |||||||||||||             ||| ||||| |    
T  25533337 atgttgttagatactt-aaatacttccaatttatattatgagtgttccatatgaatgttatttttgcttgaatttg-------------cggtcgatcag 25533252  T
Q  251 ttagcttatcttacacacgaagcaatttttctttggtacctagagcctttcaagccacccttttatattcttattatcctttgtgaaaccactttcagcc 350  Q
    |||  |||| |||||||||| ||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||| || ||||||||| | ||    
T  25533251 ttaagttatattacacacgaggcaatttttctttggtacctaaagcctttcaagcgaccctattatattcttattatcctttatg-aaccactttgatcc 25533153  T
Q  351 tccagac-aaaagtttatttctttattagt 379  Q
    | ||||| |||| ||  |||||||||||||    
T  25533152 ttcagacgaaaaattattttctttattagt 25533123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 188 - 354
Target Start/End: Original strand, 22565625 - 22565791
Alignment:
Q  188 atgagtgttccatatgaatgctattattgcttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaatttttctttggt 287  Q
    |||||||||||| ||||||| |||| ||||||||||||| |   |||| ||||  || ||| || |  |||| |||||||||| ||||||||| || |||    
T  22565625 atgagtgttccaaatgaatgttatttttgcttgaatttgtggttgttccttacaaacaatcagtcatgttatattacacacgatgcaattttttttgggt 22565724  T
Q  288 acctagagcctttcaagccacccttttatattcttattatcctttgtgaaaccactttcagcctcca 354  Q
    ||||  ||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||    
T  22565725 accttaagcctttcaagccacccttttatattcttatcatcctttgtgaaacccctttgagcctcca 22565791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 314 - 414
Target Start/End: Complemental strand, 28919173 - 28919073
Alignment:
Q  314 tatattcttattatcctttgtgaaaccactttcagcctccagacaaaagtttatttctttattagtgatgaatcatgtcacagtcctacactttaattgc 413  Q
    ||||||||||||||||||  |||||||| ||| |||||| ||||||||  |||||||||||||||||| ||||||||||||| ||||||||||||| |||    
T  28919173 tatattcttattatccttcctgaaaccagtttgagcctcaagacaaaaaattatttctttattagtgacgaatcatgtcacaatcctacactttaaatgc 28919074  T
Q  414 a 414  Q
    |    
T  28919073 a 28919073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 16816000 - 16815947
Alignment:
Q  18 gctagtttacccttacattcaagagcacgatactttctggggcttgctagtgaa 71  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  16816000 gctagtttacccttacattcaagagcacgatactttctgaggcttgctactgaa 16815947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 16855157 - 16855104
Alignment:
Q  18 gctagtttacccttacattcaagagcacgatactttctggggcttgctagtgaa 71  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  16855157 gctagtttacccttacattcaagagcacgatactttctgaggcttgctactgaa 16855104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 293 - 354
Target Start/End: Complemental strand, 24522641 - 24522581
Alignment:
Q  293 gagcctttcaagccacccttttatattcttattatcctttgtgaaaccactttcagcctcca 354  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||| |||| ||||||||    
T  24522641 gagccttttaagccacccttt-atattcttattatcctttgtgaaacctctttgagcctcca 24522581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 277 - 354
Target Start/End: Complemental strand, 24527423 - 24527347
Alignment:
Q  277 ttttctttggtacctagagcctttcaagccacccttttatattcttattatcctttgtgaaaccactttcagcctcca 354  Q
    |||| |||||||||| |||||||| |||||| ||||  |||||||||||||||||||||||||| |||| ||||||||    
T  24527423 ttttttttggtaccttgagccttttaagccatccttc-atattcttattatcctttgtgaaacctctttgagcctcca 24527347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 22 - 409
Target Start/End: Original strand, 13130692 - 13131070
Alignment:
Q  22 gtttacccttacattcaagagcacgatactttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtgagat 121  Q
    ||||| ||||||||||||||||| |||||||| || |||||||| ||||||||| ||| | |||||||| | |||||||||||| |||||||||||||||    
T  13130692 gtttatccttacattcaagagcatgatactttatgcggcttgctcgtgaaggtacttaaaagatcaccatctcttttccgaatatcataaccggtgagat 13130791  T
Q  122 ttagagtcaaatatttccatatccattctaggttgttagatacttaaaatatttccaatacatattatgagtgttccatatgaatgctattattgcttga 221  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||| ||||| ||||      |||| |||||||| |||||||||||| ||||||||    
T  13130792 ttagagcccaatatttccatatccattctaggttgttagatacttaaa-tattttcaat------tatgtgtgttccaaatgaatgctatttttgcttga 13130884  T
Q  222 atttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaatttttctttggtacctagagcctttcaagccacccttttatattct 321  Q
    ||||||| ||||||||||||||||||||||||| |||| |||||||||  |||||||||||||||||||| ||||||||||||||||||  |||||||||    
T  13130885 atttgcggccgttctttacggacgatcggttaggttatattacacacgtggcaatttttctttggtaccttgagcctttcaagccaccc--ttatattct 13130982  T
Q  322 tattatcctttgtgaaaccactttcagcctccagacaaaagtttatttctttattagtgatgaatcatgtcacagtcctacactttaa 409  Q
    ||| ||| |||||||||||||||| ||||||||||  | | ||| ||||||  || |||| |||| ||||||||||||||||||||||    
T  13130983 tatcatcttttgtgaaaccactttgagcctccagatgataatttctttcttattttgtgacgaattatgtcacagtcctacactttaa 13131070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 51 - 408
Target Start/End: Complemental strand, 25097556 - 25097205
Alignment:
Q  51 tttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtgagatttagagtcaaatatttccatatccattct 150  Q
    ||||| ||| ||||||||||||||| |||||  |||||| || ||||| ||| |||||||| |||||||||| |||| ||||||||||||||||||||||    
T  25097556 tttctagggtttgctagtgaaggtacttatacaatcacctactctttttcgattagcataaacggtgagattcagagccaaatatttccatatccattct 25097457  T
Q  151 aggttgttagatacttaaaatatttccaatacatattatgagtgttccatatgaatgctattattgcttgaatttgcgaccgttctttacggacgatcgg 250  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||| || ||  |||||||||||||||||||     
T  25097456 aggatgttagatacttaaa-tatttccaatacatattatgagtgttccatatgaatgttatttttgcttgaacttacggtcgttctttacggacgatcga 25097358  T
Q  251 ttagcttatcttacacacgaagcaatttttctttggtacctagagcctttcaagccacccttttatattcttattatcctttgtgaaaccactttcagcc 350  Q
    |||| |||| ||||||||||  ||||||||||||||||||||||||||||||||||||||| |||      |||||||||||||||||||| ||| ||||    
T  25097357 ttaggttatattacacacgagtcaatttttctttggtacctagagcctttcaagccaccctatta------tattatcctttgtgaaaccaatttaagcc 25097264  T
Q  351 tccagacaaaagtttatt-tctttattagtgatgaatcatgtcacagtcctacacttta 408  Q
    |||| || ||| ||| || ||||||||||||| |||||||||||||||||| |||||||    
T  25097263 tccatacgaaattttcttctctttattagtgacgaatcatgtcacagtcctgcacttta 25097205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 12609190 - 12608894
Alignment:
Q  18 gctagtttacccttacattcaagagcacgatactttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||| |||||||| | |||||| |||||| ||||||| ||    
T  12609190 gctagtttacccttacattcaagagcacgatactttctggggcttaccagtgaaggtacttataagatcaccatctcttttctgaatagaataaccgatg 12609091  T
Q  118 agatttagagtcaaatatttccatatccattctaggttgttagatacttaaaatatttccaatacatattatgagtgttccatatgaatgctattattgc 217  Q
    ||||| |||| ||| ||||||  |||||||||||  |||||||||||||||| ||||| ||||      |||||||||||||||||||||||||| ||||    
T  12609090 agattcagagccaa-tatttcgttatccattctaaattgttagatacttaaa-tattttcaat------tatgagtgttccatatgaatgctatttttgc 12608999  T
Q  218 ttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaatttttctttggtacctagagcctttcaagccacccttttata 317  Q
    ||||||||||||| |||||||||||||||||  |||| |||| ||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||    
T  12608998 ttgaatttgcgacagttctttacggacgatcaattaggttatattacacacgagacaatttttctttggtaccttgagcctttcaagccacccttttata 12608899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 294 - 431
Target Start/End: Complemental strand, 17109717 - 17109580
Alignment:
Q  294 agcctttcaagccacccttttatattcttattatcctttgtgaaaccactttcagcctccagacaaaagtttatttctttattagtgatgaatcatgtca 393  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||  ||| |||||||||||||||||||||||||||    
T  17109717 agcctttcaagccaccctgttatattcttattatcctttgtgaaaccactttgaacctccagacaaatatttctttctttattagtgatgaatcatgtca 17109618  T
Q  394 cagtcctacactttaattgcatcctgtttcatatcact 431  Q
    || ||||||||||||| |||| | ||||| || |||||    
T  17109617 caatcctacactttaaatgcaccttgtttgatttcact 17109580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 131 - 306
Target Start/End: Complemental strand, 17110145 - 17109968
Alignment:
Q  131 aatatttccatatccattctaggttgtt----agatacttaaaatatttccaatacatattatgagtgttccatatgaatgctattattgcttgaatttg 226  Q
    ||||||| ||||||||||||||||||||    ||||||||||| || |||||||| |||| ||||| ||||||||||||||||||| |||||||||||||    
T  17110145 aatattttcatatccattctaggttgtttgttagatacttaaa-tacttccaatatatat-atgagagttccatatgaatgctatttttgcttgaatttg 17110048  T
Q  227 cgaccgttctttacggacgatcggttagcttatcttacacacgaagcaatttttctttggtacctagagcctttcaagcc 306  Q
        ||||||||||||| |||||||||| |||| ||||||||||  ||| ||||||||||||||||||||||||||||||    
T  17110047 ttgtcgttctttacggatgatcggttaggttatattacacacgagacaacttttctttggtacctagagcctttcaagcc 17109968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 199 - 354
Target Start/End: Complemental strand, 9055109 - 9054954
Alignment:
Q  199 atatgaatgctattattgcttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaa-tttttctttggtacctagagcc 297  Q
    ||||| ||| |||| ||||| ||| |||||| |||||||||||||| |||||| |  |||| || |||||    ||| |||||||||||||| | |||||    
T  9055109 atatggatgatatttttgctcgaacttgcgatcgttctttacggacaatcggtcatgttatattccacacttgtcaattttttctttggtacattgagcc 9055010  T
Q  298 tttcaagccacccttttatattcttattatcctttgtgaaaccactttcagcctcca 354  Q
    |||||||||| |||||||||||||| |||||||||||||||||  ||| ||||||||    
T  9055009 tttcaagcca-ccttttatattcttgttatcctttgtgaaacccttttgagcctcca 9054954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 17110236 - 17110144
Alignment:
Q  19 ctagtttacccttacattcaagagcacgatactttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataa 111  Q
    ||||||||| |||||||||||||| |||||||||| |||||||| |||||||| ||| | ||| |||||||| | |||||  |||||||||||    
T  17110236 ctagtttactcttacattcaagagtacgatactttttggggctttctagtgaaagtactgatatgatcaccatctcttttttgaatagcataa 17110144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 319
Target Start/End: Complemental strand, 12608877 - 12608839
Alignment:
Q  281 ctttggtacctagagcctttcaagccacccttttatatt 319  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  12608877 ctttggtaccttgagcctttcaagccacccttttatatt 12608839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 224
Target Start/End: Complemental strand, 11933967 - 11933928
Alignment:
Q  185 attatgagtgttccatatgaatgctattattgcttgaatt 224  Q
    ||||||||||||||||||||||| |||| |||||||||||    
T  11933967 attatgagtgttccatatgaatgttatttttgcttgaatt 11933928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 355
Target Start/End: Original strand, 22216232 - 22216293
Alignment:
Q  293 gagcctttcaagccacccttttatattcttattatcctttgtgaaaccactttcagcctccag 355  Q
    ||||||||||||||||  ||| | ||| |||||||| |||||||||||||||| |||||||||    
T  22216232 gagcctttcaagccactattt-acattattattatcttttgtgaaaccactttaagcctccag 22216293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 414
Target Start/End: Complemental strand, 21320815 - 21320427
Alignment:
Q  18 gctagtttacccttacattcaagagcacgatactttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtg 117  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||   ||||| ||||||||||||||||||    
T  21320815 gctagtttacccctacattcaagagcacggtactttctggggcttgctagttaaggtttttataggatcaccatatctttttcgaatagcataaccggtg 21320716  T
Q  118 agatttagagtcaaatatttccatatccattctaggttgttagatacttaaaatatttccaatacatattatgagtgttccatatgaatgctattattgc 217  Q
    ||||| ||||  ||||||||||||||||||||||| ||||||||||| |||| ||||||||||      |||||||||||||||||||||||||| ||||    
T  21320715 agattcagagcgaaatatttccatatccattctagtttgttagatacataaa-tatttccaat------tatgagtgttccatatgaatgctatttttgc 21320623  T
Q  218 ttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaatttttctttggtacctagagcctttcaagccacccttttata 317  Q
    ||||||||| |  ||||||||||||| |||||||||| ||||  |||| ||||  ||||||||||||||||||| |||||||||| |||||||  |||||    
T  21320622 ttgaatttgaggtcgttctttacggatgatcggttaggttattatacatacgagacaatttttctttggtaccttgagcctttcaggccaccc-attata 21320524  T
Q  318 ttcttattatcctttgtgaaaccactttcagcctccagacaaaagtttatttctttattagtgatgaatcatgtcacagtcctacactttaattgca 414  Q
    ||||| |||||||||||||||||||||  ||||||| ||  ||| ||| ||||||  ||||||| | ||||||||||||||||||||||||| ||||    
T  21320523 ttcttcttatcctttgtgaaaccacttcgagcctcctgatgaaaatttctttcttgtttagtgacggatcatgtcacagtcctacactttaaatgca 21320427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 70 - 406
Target Start/End: Original strand, 24721213 - 24721545
Alignment:
Q  70 aaggtatttataggatcaccaacccttttccgaatagcataaccggtgagatttagagtcaaatatttccatatccattctaggttgttagatacttaaa 169  Q
    |||||| |||||||||||||||| |||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||    
T  24721213 aaggtacttataggatcaccaactcttttctgaatagcataaccggtgagattcagagccaaatatttccatatccattctaggttgttagatactt-aa 24721311  T
Q  170 atatttccaatacatattatgagtgttccatatgaatgctattattgcttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacg 269  Q
    |||||| ||||||||||||||||||||  |||||||||||| | ||||||||||| ||||||||||||||||||||||||||||| ||||  ||||||||    
T  24721312 atattt-caatacatattatgagtgttttatatgaatgctacttttgcttgaattagcgaccgttctttacggacgatcggttaggttattatacacacg 24721410  T
Q  270 aagcaatttttctttggtacctagagcctttcaagccaccctttt--atattcttattatcctttgtgaaaccactttcagcctccaga-caaaagttta 366  Q
    | |||| |||||||||||||||    |||||||||||||||||||  ||||||||||||||||||||||||||| ||| ||||||||||  |||| ||      
T  24721411 aggcaa-ttttctttggtacct----cctttcaagccaccctttttaatattcttattatcctttgtgaaaccaatttgagcctccagatgaaaaattct 24721505  T
Q  367 tttctttattagtgatgaatcatgtcacagtcctacactt 406  Q
    |||||||||||||||  ||||||||||||||||| |||||    
T  24721506 tttctttattagtgactaatcatgtcacagtcctgcactt 24721545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 51 - 406
Target Start/End: Original strand, 26828618 - 26828973
Alignment:
Q  51 tttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtgagatttagagtcaaatatttccatatccattct 150  Q
    ||||| ||||||||||||||||||| |||||| |||||| ||  || | ||||||||||||||| |||||||||||| ||||||||||||||||| ||||    
T  26828618 tttctagggcttgctagtgaaggtacttatagaatcacctactattcttcgaatagcataaccgatgagatttagagccaaatatttccatatccgttct 26828717  T
Q  151 aggttgttagatacttaaaatatttccaatacatattatgagtgttccatatgaatgctattattgc-ttgaatttgcgaccgttctttacggacgatcg 249  Q
    |||||||||| |||||||| ||||| |||||||||||||||||||||||| |||||| |||| || | |||||||| ||  |||||||||| ||||||||    
T  26828718 aggttgttaggtacttaaa-tattttcaatacatattatgagtgttccatgtgaatgttattttttccttgaattttcggacgttctttacagacgatcg 26828816  T
Q  250 gttagcttatcttacacacgaagcaatttttctttggtacctagagcctttcaagccacccttttatattcttattatcctttgtgaaaccactttcagc 349  Q
    ||||| ||||  |||| |||| |||||||||  |||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||| ||| |||    
T  26828817 gttaggttattatacatacgaggcaattttttcttggtacctagagcctttgaagccaccctattatattcttattatcctttatgaaaccaatttgagc 26828916  T
Q  350 ctccagacaaaagttt-atttctttattagtgatgaatcatgtcacagtcctacactt 406  Q
    |||||||| ||| |||  |||||||||||||||  ||||||||| ||||||| |||||    
T  26828917 ctccagacgaaattttcttttctttattagtgacaaatcatgtc-cagtcctgcactt 26828973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 115 - 406
Target Start/End: Complemental strand, 18571685 - 18571395
Alignment:
Q  115 gtgagatttagagtcaaatatttccatatccattctaggttgttagatacttaaaatatttccaatacatattatgagtgttccatatgaatgctattat 214  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |  ||||||||||||||||||||||| |||||| |    
T  18571685 gtgagattcagagccaaatatttccatatccattctaggttgttagatacttaaa-tatttccagtttatattatgagtgttccatatgaacgctatttt 18571587  T
Q  215 tgcttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaatttttctttggtacctagagcctttcaagccaccctttt 314  Q
    | |||||||||||| | |||||||| ||||||||| |||| |||| ||||||| || |||||||| ||||||||||||||||||||||||||||||| ||    
T  18571586 ttcttgaatttgcggctgttctttatggacgatcgattaggttatattacacatgaggcaatttt-ctttggtacctagagcctttcaagccaccctgtt 18571488  T
Q  315 atattcttattatcctttgtgaaaccactttcagcctccagacaaaagttt-atttctttattagtgatgaatcatgtcacagtcctacactt 406  Q
    ||||||||||||||||||||||||| | ||| |||||||| |||||| |||  |||||||||||||||  |||||||| |||||||| |||||    
T  18571487 atattcttattatcctttgtgaaactattttgagcctccaaacaaaaatttcttttctttattagtgacaaatcatgtgacagtcctgcactt 18571395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 25231927 - 25231707
Alignment:
Q  18 gctagtttacccttacattcaagagcacgatactttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtg 117  Q
    ||||||||||||||| |||||||||||| ||||||| |||  ||| |||||||||||| ||||||||||||| || ||||||||||||||||||||||||    
T  25231927 gctagtttacccttatattcaagagcacaatactttatggaactttctagtgaaggtacttataggatcacctactcttttccgaatagcataaccggtg 25231828  T
Q  118 agatttagagtcaaatatttccatatccattctaggttgttagatacttaaaatatttccaatacatattatgagtgttccatatgaatgctattattgc 217  Q
    ||||| | || ||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||||||    
T  25231827 agattcaaagacaaatatttccatatgcattctaggttgttagatactt-aaatatttccaatatatattatgtgtgttccatatcaatgctattattgc 25231729  T
Q  218 ttgaatttgcgaccgttcttta 239  Q
    ||||||||||| ||||||||||    
T  25231728 ttgaatttgcggccgttcttta 25231707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 94 - 414
Target Start/End: Original strand, 29761742 - 29762053
Alignment:
Q  94 cttttccgaatagcataaccggtgagatttagagtcaaatatttccatatccattctaggttgttagatacttaaaatatttccaatacatattatgagt 193  Q
    |||||| ||||| |||||  | ||||||| |||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||      |||||||    
T  29761742 cttttctgaataacataaatgatgagattcagagccaaatagttccatatccattctaggttgttagatacttaaa-tatttccaat------tatgagt 29761834  T
Q  194 gttccatatgaatgctattattgcttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaatttttctttggtacctag 293  Q
    |||||||||||||| |||| || ||||||||||||   ||||||||| ||||||| ||||| |||| ||||||||||  |||       ||||||||| |    
T  29761835 gttccatatgaatgttatttttacttgaatttgcggttgttctttacagacgatcagttaggttatattacacacgagacaaaaaaaaattggtaccttg 29761934  T
Q  294 agcctttcaagccacccttttatattcttattatcctttgtgaaaccactttcagcctccagacaaaagtttatttctttattagtgatgaatcatgtca 393  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  ||||| ||||||| || |||| ||| ||||||| ||||||| |||||||||||    
T  29761935 agcctttcaagccacccttttatattcttattttcctttgtgaaaatactttaagcctcctgataaaa-tttctttcttt-ttagtgacgaatcatgtca 29762032  T
Q  394 cagtcctacactttaattgca 414  Q
    |||||||||||||||| ||||    
T  29762033 cagtcctacactttaaatgca 29762053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 183 - 431
Target Start/End: Original strand, 17099183 - 17099432
Alignment:
Q  183 atattatgagtgttccatatgaatgctattattgcttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaatttttct 282  Q
    ||||||||||||||| |||||||||||||| ||||||||||||| | |||||||||| |||||||||||||  ||||   |||||||| ||||||||| |    
T  17099183 atattatgagtgttcgatatgaatgctatttttgcttgaatttgtggccgttctttatggacgatcggttaagttattacacacacgaggcaatttttat 17099282  T
Q  283 ttggtacctagagcctttcaagccacccttttatattcttattatcctttgtgaaaccactttcagcctccagac--aaaagtttatttctttattagtg 380  Q
    ||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||| || ||||||||  |||| ||  ||||||||||||||    
T  17099283 ttggtacctagag-ctttcaagccgccctgttatattcttattatcctttgtgaaaccactttgaggctccagacgaaaaaattattttctttattagtg 17099381  T
Q  381 atgaatcatgtcacagtcctacactttaattgcatcctgtttcatatcact 431  Q
    | |||||||||||| |||||||| ||||| |||| ||| ||| || |||||    
T  17099382 acgaatcatgtcacggtcctacaatttaaatgcaccctttttgatttcact 17099432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 203 - 406
Target Start/End: Complemental strand, 17511995 - 17511790
Alignment:
Q  203 gaatgctattattgcttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaatttttctttggtacctagagcctttca 302  Q
    ||||| |||| ||| ||||||||| |  | |||||||||||||||| ||||| ||||  ||||||||| |||||||| |||||||| |  ||||||||||    
T  17511995 gaatgttatttttgtttgaatttgtggtcattctttacggacgatcagttaggttattatacacacgaggcaatttt-ctttggtatcctgagcctttca 17511897  T
Q  303 agccaccctttt---atattcttattatcctttgtgaaaccactttcagcctccagacaaaagtttatttctttattagtgatgaatcatgtcacagtcc 399  Q
    ||||||||||||   |||||||||| |||||||||||||||| ||| |||||||| |  | | ||| ||||||||| ||||| |||||||||||||||||    
T  17511896 agccaccctttttatatattcttataatcctttgtgaaaccattttgagcctccaaatgataatttttttctttatcagtgacgaatcatgtcacagtcc 17511797  T
Q  400 tacactt 406  Q
    | |||||    
T  17511796 tgcactt 17511790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 274 - 431
Target Start/End: Complemental strand, 25231695 - 25231536
Alignment:
Q  274 aatttttctttggtacctagagcctttcaagccacccttttatattcttattatcctttgtgaaaccactttcagcctccagac--aaaagtttatttct 371  Q
    ||||||| |||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||| ||  |||| ||  |||| ||  |||||    
T  25231695 aatttttatttggtacctagagtctttcaacccaccctattatattcttattatcctttgtgaaaccactttgagtttccaaacgaaaaatttcttttct 25231596  T
Q  372 ttattagtgatgaatcatgtcacagtcctacactttaattgcatcctgtttcatatcact 431  Q
    |||||||||| ||||||||||||| ||||||||||||| |||| ||| ||| || |||||    
T  25231595 ttattagtgacgaatcatgtcacaatcctacactttaaatgcaccctatttgatttcact 25231536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 28857845 - 28857720
Alignment:
Q  17 agctagtttacccttacattcaagagcacgatactttctggggcttgctagtgaaggtatttatagga-tcaccaacccttttccgaatagcataaccgg 115  Q
    ||||||||||||||||||||||||||| |||||  || |||||||| ||| |||||||| | |||  | |||||| | |||||| |||||||||||||||    
T  28857845 agctagtttacccttacattcaagagctcgataacttttggggcttactactgaaggtactcatattagtcaccatctcttttctgaatagcataaccgg 28857746  T
Q  116 tgagatttagagtcaaatatttccat 141  Q
    |||||||| ||| |||||||||||||    
T  28857745 tgagattttgagccaaatatttccat 28857720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 314 - 400
Target Start/End: Original strand, 15175547 - 15175634
Alignment:
Q  314 tatattcttattatcctttgtgaaaccactttcagcctccaga-caaaagtttatttctttattagtgatgaatcatgtcacagtcct 400  Q
    |||||||||||||||||||||||||||| ||| ||||||||||  |||| ||||||||||| ||||||| |||| |||||||||||||    
T  15175547 tatattcttattatcctttgtgaaaccattttgagcctccagatgaaaaatttatttcttttttagtgacgaattatgtcacagtcct 15175634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 190 - 344
Target Start/End: Complemental strand, 17964242 - 17964085
Alignment:
Q  190 gagtgttccatatgaatgctattattgcttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaattttt-ctttggta 288  Q
    ||||| ||||||| |||| |||| |||||  ||||||||  | |||||||||  | ||| || |  |||| |||||||||| | ||||||| ||||||||    
T  17964242 gagtggtccatataaatgttatttttgctcaaatttgcggtcattctttacgaccaatcagtcatgttatattacacacgaggaaattttttctttggta 17964143  T
Q  289 cctagagcctttcaagccacccttt--tatattcttattatcctttgtgaaaccactt 344  Q
    ||| ||||||||||||||| |||||  |||||| |||||||||||| |||||||||||    
T  17964142 ccttgagcctttcaagccatccttttatatatttttattatcctttatgaaaccactt 17964085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 354
Target Start/End: Original strand, 21230199 - 21230360
Alignment:
Q  189 tgagtgttccatatgaatgctattattgcttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaatttttctttggta 288  Q
    |||||||| ||||||||||||||| || |  |||||| ||    ||||||||||||||||  | |  |||| |||||||||| |||||||||   |||||    
T  21230199 tgagtgtttcatatgaatgctattttttcacgaattttcggttattctttacggacgatcaatcatgttatattacacacgaggcaattttt---tggta 21230295  T
Q  289 cctagagcctttcaagccacccttttatattcttattatcctttgtgaaaccactttcagcctcca 354  Q
    ||| |||| |||||||||| | ||| |||||  |||||||| ||||||||||| ||  ||||||||    
T  21230296 ccttgagcatttcaagccatcgttt-atatttgtattatccgttgtgaaaccaattggagcctcca 21230360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 431
Target Start/End: Complemental strand, 18828634 - 18828231
Alignment:
Q  19 ctagtttacccttacattcaagagcacgatactttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtga 118  Q
    ||||||||| ||||||||||||||||| | ||||| ||||||||||||||||||||| |||| ||||    ||||  |     ||||||||||||||| |    
T  18828634 ctagtttactcttacattcaagagcacaagactttttggggcttgctagtgaaggtacttatgggat----aaccggta----aatagcataaccggtaa 18828543  T
Q  119 gatttagagtcaaatatttccatatccattctaggttgttagatacttaaaatatttccaatacatattatgagtgttccatatgaatgctattattgct 218  Q
    |||| |||| |||||||| |||||| ||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  18828542 gattcagagccaaatattcccatattcattctaggttttcagatacttaaa-tatttccaatacatattatgagtgttccatatgaatgttatcattgct 18828444  T
Q  219 tgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaatttttctttggtacctagagcctttcaagccacccttttatat 318  Q
    ||||||||    |||||| ||||||| ||||||||| |||| ||| |||  | | ||||||||||| |||||||||||||||||||||||||| ||||||    
T  18828443 tgaatttgatgtcgttctgtacggacaatcggttaggttatattagacagaaggaaatttttcttttgtacctagagcctttcaagccaccctgttatat 18828344  T
Q  319 tcttattatcctttgtgaaaccactttcagcctccagacaaaagtttatttctttattagtgatgaatcatgtcacagtcctacactttaattgcatcct 418  Q
    ||||||||||||||||||||||||||| ||||||||||  ||| ||  ||||||||||||||| ||||||||||||| ||||||||||||| |||| |||    
T  18828343 tcttattatcctttgtgaaaccactttgagcctccagatgaaaattcgtttctttattagtgacgaatcatgtcacaatcctacactttaaatgcaccct 18828244  T
Q  419 gtttcatatcact 431  Q
     ||| || |||||    
T  18828243 ctttgatttcact 18828231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 276 - 345
Target Start/End: Complemental strand, 16115819 - 16115750
Alignment:
Q  276 tttttctttggtacctagagcctttcaagccacccttttatattcttattatcctttgtgaaaccacttt 345  Q
    |||||||||||||||| |||| ||| ||| || ||||||||||||||||||| |||||||||||||||||    
T  16115819 tttttctttggtaccttgagctttttaagtcatccttttatattcttattatactttgtgaaaccacttt 16115750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 354
Target Start/End: Original strand, 17610498 - 17610568
Alignment:
Q  283 ttggtacctagagcctttcaagccacccttttatattcttattatcctttgtgaaaccactttcagcctcca 354  Q
    |||||||||  |||||||||||| || |||| ||||| |||||||| |||||||||||||||| ||||||||    
T  17610498 ttggtaccttaagcctttcaagctactcttt-atatttttattatcttttgtgaaaccactttgagcctcca 17610568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 17610391 - 17610451
Alignment:
Q  184 tattatgagtgttccatatgaatgctattattgcttgaatttgcgaccgttctttacggac 244  Q
    |||| |||||||||||||||||||  ||| ||||| |||||||||  |||| |||||||||    
T  17610391 tattttgagtgttccatatgaatgtcatttttgctcgaatttgcggtcgttatttacggac 17610451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 183; Significance: 8e-99; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 51 - 395
Target Start/End: Original strand, 21844569 - 21844915
Alignment:
Q  51 tttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtgagatttagagtcaaatatttccatatccattct 150  Q
    ||||| |||||||||||| |||||| |||||||||||||||| ||||||  ||||||||||| ||||||||| |||| ||||||||||||||||||||||    
T  21844569 tttctagggcttgctagtaaaggtacttataggatcaccaactcttttcttaatagcataactggtgagattcagagccaaatatttccatatccattct 21844668  T
Q  151 aggttgttagatacttaaaatatttcca--atacatattatgagtgttccatatgaatgctattattgcttgaatttgcgaccgttctttacggacgatc 248  Q
    |||||||||||||| | |||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||  | |||||||||||||||||||    
T  21844669 aggttgttagatacat-aaatatttccaatatacatattatgagtgttccatatgaatgctatttttgcttgaatttatggccgttctttacggacgatc 21844767  T
Q  249 ggttagcttatcttacacacgaagcaatttttctttggtacctagagcctttcaagccaccctttt--atattcttattatcctttgtgaaaccactttc 346  Q
    | |||| ||||  ||||||||| ||||||| | ||||||| || ||||||||||||||||||||||  ||||||||||||||| |||| |||||| |||     
T  21844768 gattaggttattatacacacgaggcaatttct-tttggtatcttgagcctttcaagccaccctttttaatattcttattatccattgtaaaaccattttg 21844866  T
Q  347 agcctccagacaaaagtttatttctttattagtgatgaatcatgtcaca 395  Q
    ||||||||||  ||||||  |||||||||||||||||||| | ||||||    
T  21844867 agcctccagatgaaagttcttttctttattagtgatgaattacgtcaca 21844915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 55 - 323
Target Start/End: Original strand, 9870131 - 9870396
Alignment:
Q  55 tggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtgagatttagagtcaaatatttccatatccattctaggt 154  Q
    ||||| ||||||||||||||| |||||||||||| ||   |||||| ||||||||||||||||||||| | || ||||||||| ||||||||||||||||    
T  9870131 tgggggttgctagtgaaggtacttataggatcacaaattgttttccaaatagcataaccggtgagattcatagccaaatattttcatatccattctaggt 9870230  T
Q  155 tgttagatacttaaaatatttccaatacatattatgagtgttccatatgaatgctattattgcttgaatttgcgaccgttctttacggacgatcggttag 254  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||| |||||||||||||    
T  9870231 tgttagatactt-aaatatttccaatatatattatgagtgttccatatgaatgctatttttgctcgaatttgcgtccgttctttacagacgatcggttag 9870329  T
Q  255 cttatcttacacacgaagcaatttttctttggtacctagagcctttcaagccacccttttatattctta 323  Q
     || |  ||||||| ||| || ||||||||||||||| |||||||||||||||||| ||| ||||||||    
T  9870330 gttgttatacacac-aaggaaattttctttggtaccttgagcctttcaagccaccccttt-tattctta 9870396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 57 - 357
Target Start/End: Original strand, 23843572 - 23843873
Alignment:
Q  57 gggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtgagatttagagtcaaatatttccatatccattctaggttg 156  Q
    ||||||||||| |||||| ||||||| |||||| || |||||||||||||||||||  |||| ||| | |  ||||||||||||||||||||||||||||    
T  23843572 gggcttgctagggaaggtgtttatagaatcacctactcttttccgaatagcataactagtgatattcataaccaaatatttccatatccattctaggttg 23843671  T
Q  157 ttagatacttaaaatatttccaata--catattatgagtgttccatatgaatgctattattgcttgaatttgcgaccgttctttacggacgatcggttag 254  Q
      ||||||||||| |||||  ||||  |||||||||| |||||||||||||||||| | |||||||||||||||   |||||||||  ||||||||||||    
T  23843672 caagatacttaaa-tatttataatatacatattatgactgttccatatgaatgctacttttgcttgaatttgcggttgttctttacaaacgatcggttag 23843770  T
Q  255 cttatcttacacacgaagcaatttttctttggtacctagagcctttcaagccacccttttatattcttattatcctttgtgaaaccactttcagcctcca 354  Q
     |||| ||||| |||| |||||||||||||  ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||    
T  23843771 gttatattacatacgaggcaatttttctttcatacctagagtctttcaagccaccctattatattcttattatcctttgtgaaaccactttgaacctcca 23843870  T
Q  355 gac 357  Q
    |||    
T  23843871 gac 23843873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 111 - 356
Target Start/End: Complemental strand, 22571032 - 22570797
Alignment:
Q  111 accggtgagatttagagtcaaatatttccatatccattctaggttgttagatacttaaaatatttccaatacatattatgagtgttccatatgaatgcta 210  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||   ||||||       |||||||||||||||||||||||||    
T  22571032 accggtgagatttagagccatatatttccatatccattctaggttgttagatacttaaatactttcca-------ttatgagtgttccatatgaatgcta 22570940  T
Q  211 ttattgcttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaatttttctttggtacctagagcctttcaagccaccc 310  Q
    || |  || ||||||||| || ||||||||| |||||||| ||  ||||  |||||||   || ||||||||||||||||| |||||||| |||||||||    
T  22570939 ttttacctggaatttgcggccattctttacgaacgatcgggtatattataatacacacattgc-atttttctttggtaccttgagccttttaagccaccc 22570841  T
Q  311 ttttatattcttattatcctttgtgaaaccactttcagcctccaga 356  Q
    |||  ||||||||||||||||||||||||||||||  |||||||||    
T  22570840 ttt--tattcttattatcctttgtgaaaccactttgtgcctccaga 22570797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 188 - 356
Target Start/End: Original strand, 22525666 - 22525833
Alignment:
Q  188 atgagtgttccatatgaatgctattattgcttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaattttt-ctttgg 286  Q
    ||||||||| |||||| |||||||| | ||| | ||||||| ||||||||||  || ||| |||||  |||| |||||||||| ||||||||| ||||||    
T  22525666 atgagtgtttcatatggatgctattctagctcgcatttgcggccgttctttatagatgattggttaatttatattacacacgaggcaattttttctttgg 22525765  T
Q  287 tacctagagcctttcaagccacccttttatattcttattatcctttgtgaaaccactttcagcctccaga 356  Q
    ||||| |||| |||||| ||||||||  ||||||||||| ||||||||||||||||||| ||||||||||    
T  22525766 taccttgagcatttcaaaccaccctt--atattcttattttcctttgtgaaaccactttgagcctccaga 22525833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 15455596 - 15455490
Alignment:
Q  18 gctagtttacccttacattcaagagcacgatactttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtg 117  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||  ||||||||||| || | |||||  ||||||||||  ||||     
T  15455596 gctagtttacccttacattcaagagcacgatactttttggggcttgctactgaaggtgcttataggatcatcatctcttttttgaatagcatagtcggta 15455497  T
Q  118 agattta 124  Q
    |||||||    
T  15455496 agattta 15455490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 276 - 356
Target Start/End: Original strand, 11176677 - 11176758
Alignment:
Q  276 tttttctttggtacctagagcctttcaagccaccctttt-atattcttattatcctttgtgaaaccactttcagcctccaga 356  Q
    |||||||||||||||| ||  |||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| ||||    
T  11176677 tttttctttggtaccttgatactttcaagccaccctttttatattcttattatcctttttgaaaccactttgagccttcaga 11176758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 320 - 395
Target Start/End: Original strand, 9871347 - 9871423
Alignment:
Q  320 cttattatcctttgtgaaaccactttcagcctccagac-aaaagtttatttctttattagtgatgaatcatgtcaca 395  Q
    ||||||||||||| |||||||||||| ||||| ||||| |||| |||||||||| |||||||| |||||||||||||    
T  9871347 cttattatcctttatgaaaccactttaagccttcagacgaaaaatttatttcttcattagtgacgaatcatgtcaca 9871423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 282 - 351
Target Start/End: Original strand, 28588212 - 28588280
Alignment:
Q  282 tttggtacctagagcctttcaagccacccttttatattcttattatcctttgtgaaaccactttcagcct 351  Q
    |||||||||| |||||| ||||||| |||||| |||||||||||||||||||||| |||||||| |||||    
T  28588212 tttggtaccttgagcctctcaagccgcccttt-atattcttattatcctttgtgataccactttgagcct 28588280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 11176537 - 11176606
Alignment:
Q  35 ttcaagagcacgatactttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaat 104  Q
    ||||||||||| ||||||| |||||||||||| |||||||| ||||||||||| || | |||||| ||||    
T  11176537 ttcaagagcacaatactttttggggcttgctactgaaggtacttataggatcaacatctcttttctgaat 11176606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 22525513 - 22525632
Alignment:
Q  18 gctagtttacccttacattcaagagcacgatactttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtg 117  Q
    ||||| ||||| |||||||||| ||| |||||  |  || ||||| ||| |||||||| |||||  ||||||| | |||||| ||||||||||| | |||    
T  22525513 gctaggttaccattacattcaaaagctcgataactattgaggcttactactgaaggtacttatataatcaccatctcttttctgaatagcataatcagtg 22525612  T
Q  118 agatttagagtcaaatattt 137  Q
    ||||||| || |||||||||    
T  22525613 agatttatagccaaatattt 22525632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 181; Significance: 1e-97; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 55 - 414
Target Start/End: Original strand, 34275354 - 34275713
Alignment:
Q  55 tggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtgagatttagagtcaaatatttccatatccattctaggt 154  Q
    |||| ||||||| | || ||| ||||| |||||||| | |||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  34275354 tgggacttgctaataaatgtacttataagatcaccatctcttttctgaatagcataaccggtgagattcagagccaaatatttccatatccattctaggt 34275453  T
Q  155 tgttagatacttaaaatatttccaatacatattatgagtgttccatatgaatgctattattgcttgaatttgcgaccgttctttacggacgatcggttag 254  Q
    |||||||||||||||| | |||||||  |||| ||||||||||||||||||||||||| |||||||||||||||  | ||||||||||||||| | ||||    
T  34275454 tgttagatacttaaaa-acttccaatttatatcatgagtgttccatatgaatgctatttttgcttgaatttgcggtcattctttacggacgattgattag 34275552  T
Q  255 cttatcttacacacgaagcaatttttctttggtacctagagcctttcaagccacccttttatattcttattatcctttgtgaaaccactttcagcctcca 354  Q
     ||||  |||||||    |||||||  ||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34275553 gttattatacacacatgacaatttt--tttgggaccttgaacctttcaagccacccttttatattcttattatcctttgtgaaaccactttgagcctcca 34275650  T
Q  355 gac-aaaagtttatttctttattagtgatgaatcatgtcacagtc--ctacactttaattgca 414  Q
    ||| |||| ||| ||||||||||||||| ||||||||||||||||  ||||||||||| ||||    
T  34275651 gacgaaaattttctttctttattagtgacgaatcatgtcacagtcctctacactttaaatgca 34275713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 84 - 400
Target Start/End: Complemental strand, 19913768 - 19913454
Alignment:
Q  84 atcaccaacccttttccgaatagcataaccggtgagatttagagtcaaatatttccatatccattctaggttgttagatacttaaaatatttccaataca 183  Q
    ||||||| | |||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| || ||  |||| |    
T  19913768 atcaccatctcttttctgaatagcataaccggtgagattcagagccaaatatttccatatccattctaggttgttagatacttaaa-tactta-aatata 19913671  T
Q  184 tattatgagtgttccatatgaatgctattattgcttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaatttttctt 283  Q
    |||| | |||||||||||| |||| |||| |||||||||||||||  ||||||||||| || |||   ||  ||||  |||||||||  ||||||||| |    
T  19913670 tattgtaagtgttccatataaatgttatttttgcttgaatttgcggtcgttctttacgaacaatcaactaagttattatacacacgagtcaatttttcat 19913571  T
Q  284 tggtacctagagcctttcaagccacccttttatattcttattatcctttgtgaaaccactttcagcctccagacaaaagtttatttctttattagtgatg 383  Q
    |||||||| |||||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||||||||| ||| ||| ||||||||||||||||     
T  19913570 tggtaccttgagcctttcaagccacccttttatatcctgattatcctttgtgaaactactttgagcctccagacgaaattttctttctttattagtgata 19913471  T
Q  384 aatcatgtcacagtcct 400  Q
    |||||||||||||||||    
T  19913470 aatcatgtcacagtcct 19913454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 57 - 406
Target Start/End: Complemental strand, 13586804 - 13586455
Alignment:
Q  57 gggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcata-accggtgagatttagagtcaaatatttccatatccattctaggtt 155  Q
    |||||||||||| || ||| ||||||||||| |||| |||||| |||||||||| || | |||| || |||| ||||||||| |||||||||||||||||    
T  13586804 gggcttgctagtaaaagtacttataggatcaacaactcttttctgaatagcatatactgatgaggttcagagccaaatattttcatatccattctaggtt 13586705  T
Q  156 gttagatacttaaaatatttccaatacatattatgagtgttccatatgaatgctattattgcttgaatttgcgaccgttctttacggacgatcggttagc 255  Q
     ||||||||||||  |||||| |||||||||||||| |||||||||||||||||||| |||||||||||||   ||||||||||| ||||||  |||||     
T  13586704 attagatacttaag-tatttcaaatacatattatgaatgttccatatgaatgctatttttgcttgaatttgtagccgttctttacagacgataagttagg 13586606  T
Q  256 ttatcttacacacgaagcaatttttctttggtacctagagcctttcaagccaccc--ttttatattcttattatcctttgtgaaaccactttcagcctcc 353  Q
    || |  ||||||||| |||| ||||||||||||||| |||||||||| | |||||  ||||||||||||||||||||||||||||||| ||| |||||||    
T  13586605 ttgttatacacacgaggcaa-ttttctttggtaccttgagcctttcatgacacccttttttatattcttattatcctttgtgaaaccattttgagcctcc 13586507  T
Q  354 agacaaaagtttatttctttattagtgatgaatcatgtcacagtcctacactt 406  Q
    |||  |||  || ||||||||||| |||  ||||||||||| ||||| |||||    
T  13586506 agatgaaa-attctttctttattaatgacaaatcatgtcaccgtcctgcactt 13586455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 46 - 431
Target Start/End: Original strand, 12770095 - 12770471
Alignment:
Q  46 gatactttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtgagatttagagtcaaatatttccatatcc 145  Q
    |||||||||||||||||| ||||||||||| ||||| ||| |||| |  |||||  ||||||||||||||||||||| |||| |||||||||||||||||    
T  12770095 gatactttctggggcttgttagtgaaggtacttataagat-accatctattttcaaaatagcataaccggtgagattcagagccaaatatttccatatcc 12770193  T
Q  146 attctaggttgttagatacttaaaatatttccaatacatattatgagtgttccatatgaatgctattattgcttgaatttgcgaccgttctttacggacg 245  Q
    |||||||||| ||||||||||||| |||||| |||      ||||||||||||||||||||||||||  || |||||||||||  ||||||||||||||     
T  12770194 attctaggttcttagatacttaaa-tatttctaat------tatgagtgttccatatgaatgctatttctgtttgaatttgcggtcgttctttacggaca 12770286  T
Q  246 atcggttagcttatcttacacacgaagcaatttttctttggtacctagagcctttcaagccacccttttatattcttattatcctttgtgaaaccacttt 345  Q
    ||||||||| ||||  ||||||| |||  |||||||||| |||||| ||||||| |||||||| | ||||| ||||||||||||||| ||||||||||||    
T  12770287 atcggttaggttattatacacac-aagacatttttctttagtaccttgagccttccaagccacac-tttattttcttattatcctttctgaaaccacttt 12770384  T
Q  346 cagcctccagacaaaagtttatttc-ttta-ttagtgatgaatcatgtcacagtcctacactttaattgcatcctgtttcatatcact 431  Q
     || ||| |||| ||| ||| |||| |||| ||||||| ||||| ||||||||||||  ||||| | |||| ||||||| || |||||    
T  12770385 gag-ctctagacgaaaatttctttcatttacttagtgacgaatcgtgtcacagtcctgaactttcaatgcaccctgtttgatttcact 12770471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 51 - 394
Target Start/End: Complemental strand, 8766880 - 8766556
Alignment:
Q  51 tttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtgagatttagagtcaaatatttccatatccattct 150  Q
    ||||| |||||||||||| |||||| |||||||||||||||| |||||| |||| ||||||||||||||||| |||| ||||||||||||||||||||||    
T  8766880 tttctagggcttgctagtaaaggtaattataggatcaccaactcttttctgaattgcataaccggtgagattcagagccaaatatttccatatccattct 8766781  T
Q  151 aggttgttagatacttaaaatatttccaatacatattatgagtgttccatatgaatgctattattgcttgaatttgcgaccgttctttacggacgatcgg 250  Q
    |||||||||||||||| |||||||||||                    ||||||||| |||| ||||||||||||||| ||||||||||| ||||||| |    
T  8766780 aggttgttagatactt-aaatatttcca--------------------atatgaatgttatttttgcttgaatttgcgtccgttctttacagacgatcag 8766702  T
Q  251 ttagcttatcttacacacgaagcaatttttctttggtacctagagcctttcaagccaccctttt--atattcttattatcctttgtgaaaccactttcag 348  Q
    |||| ||||  ||||||||| |||| |||| |||||||||| ||||||||||||||| ||||||  ||||||||||||||||||| ||||||| ||| ||    
T  8766701 ttaggttattatacacacgaggcaa-ttttgtttggtaccttgagcctttcaagccatcctttttaatattcttattatcctttgcgaaaccattttgag 8766603  T
Q  349 cctccaga-caaaagtttatttctttattagtgatgaatcatgtcac 394  Q
    |||||| |  |||| ||  ||||||||||||||| ||||||||||||    
T  8766602 cctccaaatgaaaaattattttctttattagtgacgaatcatgtcac 8766556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 17142604 - 17142276
Alignment:
Q  18 gctagtttacccttacattcaagagcacgatactttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtg 117  Q
    |||||||||||||||||||||||||||||||| ||| |||| || |||| | |||||| ||||| |||||||| |  |||||  ||||||||||||| ||    
T  17142604 gctagtttacccttacattcaagagcacgatagtttatgggactggctactaaaggtacttataagatcaccatcttttttctaaatagcataaccgctg 17142505  T
Q  118 agatttagagtcaaatatttccatatccattctaggttgttagatacttaaaatatttccaatacatattatgagtgttccatatgaatgctattattgc 217  Q
    |||||| ||||||||||||| || ||  || |||||||||||| |||||||| | ||||       || |||||||||||||||||||||||||| ||||    
T  17142504 agatttggagtcaaatattttca-atatatcctaggttgttaggtacttaaattctttc-------tactatgagtgttccatatgaatgctatttttgc 17142413  T
Q  218 ttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaatttttctttggtacctagagcctttcaagccaccctttta-- 315  Q
    | ||||||| |  | ||||||||||||||||| |||  ||| |  ||| |||| ||| |||||||||||||||| ||||||||||||||||| |||||      
T  17142412 tcgaatttgtggtcattctttacggacgatcgattatgttaac--acaaacgaggcattttttctttggtaccttgagcctttcaagccaccattttata 17142315  T
Q  316 -tattcttattatcctttgtgaaaccactttcagcctcc 353  Q
     |||| |||||||||||| |||||||||||| |||||||    
T  17142314 ttattattattatcctttatgaaaccactttgagcctcc 17142276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 59 - 396
Target Start/End: Complemental strand, 8771755 - 8771437
Alignment:
Q  59 gcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtgagatttagagtcaaatatttccatatccattctaggttgtt 158  Q
    |||||||||| |||||| |||||||||||||||| |||||| |||| ||||||||||||||||| |||| ||||||||||||||||||||||| ||||||    
T  8771755 gcttgctagtaaaggtaattataggatcaccaactcttttctgaattgcataaccggtgagattcagagccaaatatttccatatccattctaagttgtt 8771656  T
Q  159 agatacttaaaatatttccaatacatattatgagtgttccatatgaatgctattattgcttgaatttgcgaccgttctttacggacgatcggttagctta 258  Q
    |||||||| |||||||||||                    ||||||||| ||||  ||||| |||||||| | ||||||||| ||||||| ||||| |||    
T  8771655 agatactt-aaatatttcca--------------------atatgaatgttatttctgcttcaatttgcggctgttctttacagacgatcagttaggtta 8771577  T
Q  259 tcttacacacgaagcaatttttctttggtacctagagcctttcaagccaccctttt--atattcttattatcctttgtgaaaccactttcagcctccaga 356  Q
    |  ||| ||||| |||| |||| |||||||||| ||||||||||||||| ||||||  ||||||||||||||||||| ||||||| ||| |||||||| |    
T  8771576 ttatacgcacgaggcaa-ttttgtttggtaccttgagcctttcaagccatcctttttaatattcttattatcctttgcgaaaccattttgagcctccaaa 8771478  T
Q  357 -caaaagtttatttctttattagtgatgaatcatgtcacag 396  Q
      |||||||  ||||||||||||||| ||||||||||||||    
T  8771477 tgaaaagttcttttctttattagtgacgaatcatgtcacag 8771437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 200 - 406
Target Start/End: Complemental strand, 8146907 - 8146700
Alignment:
Q  200 tatgaatgctattattgcttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaatttttctttggtacctagagcctt 299  Q
    ||||||||||||| |||| |||||||| |||| |||||||||||||||| ||||| ||||  ||||||||| ||||||||||||||||| || |||||||    
T  8146907 tatgaatgctatttttgcatgaatttgagaccattctttacggacgatcagttaggttattatacacacgaggcaatttttctttggtaacttgagcctt 8146808  T
Q  300 tcaagccaccc-ttttatattcttattatcctttgtgaaaccactttcagcctccagacaaaagtttatttctttattagtgatgaatcatgtcacagtc 398  Q
    ||||||||||| ||||||||||||||||| ||||||||||||| ||| | |||||||   ||| |||||||||||||||||||  |||||||||||| ||    
T  8146807 tcaagccaccctttttatattcttattattctttgtgaaaccaatttgaacctccaggtgaaattttatttctttattagtgacaaatcatgtcacactc 8146708  T
Q  399 ctacactt 406  Q
    ||||||||    
T  8146707 ctacactt 8146700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 187 - 431
Target Start/End: Original strand, 19166327 - 19166569
Alignment:
Q  187 tatgagtgttccatatgaatgctattattgcttgaatttgcgaccgttctttacggacgatcggttagcttatcttacacacgaagcaatttttctttgg 286  Q
    |||||||||||||||||||  ||||| || |||||||||| |  |||||||||| ||||||||||||| ||||  |||||||||  |||||||||||||     
T  19166327 tatgagtgttccatatgaacactatttttacttgaatttgtggtcgttctttacagacgatcggttaggttattatacacacgagacaatttttctttgc 19166426  T
Q  287 tacctagagcctttcaagccacccttttatattcttattatcctttgtgaaaccactttcagcctccagacaaaagtttatttctttattagtgatgaat 386  Q
    ||||| ||| |||||||||||||||| ||||||||||||||||  |||||||| ||||| ||||||||||  ||| ||| ||||||||||| ||| ||||    
T  19166427 taccttgagtctttcaagccacccttatatattcttattatcc-ctgtgaaacgactttgagcctccagatgaaa-tttctttctttattaatgacgaat 19166524  T
Q  387 catgtcacagtcctacactttaattgcatcctgtttcatatcact 431  Q
    ||||| ||| ||||||||||||| |||||||||||| || |||||    
T  19166525 catgtaacattcctacactttaaatgcatcctgtttgatttcact 19166569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 159 - 331
Target Start/End: Original strand, 8880396 - 8880567
Alignment:
Q  159 agatacttaaaatatttccaatacatattatgagtgttccatatgaatgctattattgcttgaatttgcgaccgttctttacggacgatcggttagctta 258  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||  |||| |||| ||| ||||| |||| |||    
T  8880396 agatacttaaa-tatttccaatacatattatgagtgttcaatatgaatgttattatttcttgaatttgcggtcgttttttatggatgatcgcttaggtta 8880494  T
Q  259 tcttacacacgaagcaatttttctttggtacctagagcctttcaagccacccttttatattcttattatcctt 331  Q
    | ||||||||||  |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8880495 tattacacacgagacaatatttctttggtacctagagcctttcaagccaccctattatattcttattatcctt 8880567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 51 - 212
Target Start/End: Original strand, 19578076 - 19578236
Alignment:
Q  51 tttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtgagatttagagtcaaatatttccatatccattct 150  Q
    ||||| |||||||||||||||| || | |||| |||||| || |||||||||||| ||||| |||||| ||||| || ||||||||||||||||||||||    
T  19578076 tttctagggcttgctagtgaagatactcatagtatcacctactcttttccgaatatcataatcggtgaaatttatagccaaatatttccatatccattct 19578175  T
Q  151 aggttgttagatacttaaaatatttccaatacatattatgagtgttccatatgaatgctatt 212  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  19578176 aggttgttagatactt-aaatatttccaatacatattatgagtgttccatatgaatgttatt 19578236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 19166119 - 19166285
Alignment:
Q  18 gctagtttacccttacattcaagagcacgatactttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtg 117  Q
    ||||||||||| |||||||||||||  ||||||||| ||||||||||| ||||||||| |||||||||| ||| | |||||  |||||||| ||||||||    
T  19166119 gctagtttacctttacattcaagagtgcgatacttt-tggggcttgctcgtgaaggtacttataggatcgccatctcttttatgaatagcacaaccggtg 19166217  T
Q  118 agatttagagtcaaatatttccatatccattctaggttgttagatacttaaaatatttccaatacatat 186  Q
    ||||| | || |||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||    
T  19166218 agattcatagccaaatatttccatatccattctaggttgttagatactt-aaataattccaatatatat 19166285  T

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Target: chr3; HSP #13
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 16227289 - 16227158
Alignment:
Q  18 gctagtttacccttacattcaagagcacgatactttctggggcttgctagtgaaggtatttataggatcaccaacccttttccgaatagcataaccggtg 117  Q
    ||||||||||||||||||||||||||| |||||||| ||  ||||||| ||||||||| |||||||| ||||| | |||||| ||||||||||||| |||    
T  16227289 gctagtttacccttacattcaagagcatgatactttttgaagcttgcttgtgaaggtacttataggaccaccatctcttttctgaatagcataaccagtg 16227190  T
Q  118 agatttagagtcaaatatttccatatccattc 149  Q
    |||||||||||||||||||| |||||||||||    
T  16227189 agatttagagtcaaatattttcatatccattc 16227158  T

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Target: chr3; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 97 - 160
Target Start/End: Original strand, 8878730 - 8878793
Alignment:
Q  97 ttccgaatagcataaccggtgagatttagagtcaaatatttccatatccattctaggttgttag 160  Q
    |||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  8878730 ttccgaatagtataacctgtgagatttagagccaaatatttccatatccattctaggttgttag 8878793  T

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Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 365
Target Start/End: Complemental strand, 16226314 - 16226234
Alignment:
Q  286 gtacctagagcctttcaagccaccctttt-atattcttattatcctttgtgaaaccactttcagcctccagacaaaagttt 365  Q
    |||||| ||||||||  ||||||| |||| |||||| |||||||||||||||||||| ||| ||||||||||  |||||||    
T  16226314 gtaccttgagcctttatagccaccttttttatattcctattatcctttgtgaaaccaatttgagcctccagatgaaagttt 16226234  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 400
Target Start/End: Original strand, 8880571 - 8880605
Alignment:
Q  366 atttctttattagtgatgaatcatgtcacagtcct 400  Q
    |||||||||||||||| ||||||||||||||||||    
T  8880571 atttctttattagtgacgaatcatgtcacagtcct 8880605  T

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Target: scaffold0072 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 39188 - 39130
Alignment:
Q  296 cctttcaagccacccttttatattcttattatcctttgtgaaaccactttcagcctcca 354  Q
    |||||||||| ||| | |||||||||||||||||||||| |||||||||| ||||||||    
T  39188 cctttcaagctaccatgttatattcttattatcctttgtaaaaccactttgagcctcca 39130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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