View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3449_low_20 (Length: 208)
Name: NF3449_low_20
Description: NF3449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3449_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 116; Significance: 3e-59; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 68 - 191
Target Start/End: Original strand, 14021108 - 14021231
Alignment:
| Q |
68 |
cactagaacatgtacattgtacaaagaaaactaaatcatgaccaaaagtctagataaaattaaactcaaattagttcatcaacaataataagatcatcta |
167 |
Q |
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| T |
14021108 |
cactagagcatgtacattgtacaaagaaaactaaatcatgaccaaaggtctagataaaattaaactcaaattagttcatcaacaataataagatcatcta |
14021207 |
T |
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| Q |
168 |
atcaaattaaagtactagaatctt |
191 |
Q |
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| T |
14021208 |
atcaaattaaagtactagaatctt |
14021231 |
T |
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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 55
Target Start/End: Original strand, 14021044 - 14021072
Alignment:
| Q |
27 |
aacacaaacaatactgcaaattaaagaaa |
55 |
Q |
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| T |
14021044 |
aacacaaacaatactgcaaattaaagaaa |
14021072 |
T |
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