View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3449_low_4 (Length: 402)
Name: NF3449_low_4
Description: NF3449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3449_low_4 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 16 - 402
Target Start/End: Complemental strand, 50393485 - 50393099
Alignment:
| Q |
16 |
acctataaacaaaatcaaagcctttgtgtcatcatagtaaatagcagagtaaagctgtgtgattattgcaccactaagaccaacatagcctttaagaatt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
50393485 |
acctataaacaaaatcaaagcctttgtgtcatcatagtaaatagcagagtaaagctgtgtgattattgcaccactaagaccaacataacctttaagaatt |
50393386 |
T |
|
| Q |
116 |
cccaaaaccgcgccacgagattcagggaaattcttaacacaagtcacaagtgaaccagtgtttgcaaaagactgagaattagcacctatacaaatgtaaa |
215 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50393385 |
cccaaaaccgctccgcgagattcagggaaattcttaacacaagtcacaagtgaaccagtgtttgcaaaagactgagaattagcacctatacaaatgtaaa |
50393286 |
T |
|
| Q |
216 |
gacacatttgccaaacttttggtcttgctannnnnnnggtgactgataaccaaatcataaagtaaccaaaaaagtttagtatagcacctattgttaaaac |
315 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50393285 |
gacacatttgccaaacttttggtcttgctatttttttggtgactgataaccaaatcataaagtaaccaaaaaagtttagtatagcacctattgttaaaac |
50393186 |
T |
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| Q |
316 |
tacccaaggtggatagagttcgttgactagtcctgcaaggacaccaacgttgctaccaaaatctttgaaaaaactaaggaggtttag |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50393185 |
tacccaaggtggatagagttcgttgactagtcctgcaaggacaccaacgttgctaccaaaatctttgaaaaaactaaggaggtttag |
50393099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 20 - 399
Target Start/End: Complemental strand, 50385062 - 50384683
Alignment:
| Q |
20 |
ataaacaaaatcaaagcctttgtgtcatcatagtaaatagcagagtaaagctgtgtgattattgcaccactaagaccaacatagcctttaagaattccca |
119 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
50385062 |
ataaacaaaatcaaagcctttgtgtcatcataataaatagcagagtaaagctgtgtgatgattgcaccactgagaccaacatagcctttaagaattccca |
50384963 |
T |
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| Q |
120 |
aaaccgcgccacgagattcagggaaattcttaacacaagtcacaagtgaaccagtgtttgcaaaagactgagaattagcacctatacaaatgtaaagaca |
219 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50384962 |
aaaccgcgccgcgagattcagggaaattcttaacacaagtcacaagtgaaccagtgtttgcaaaagactgagaattagcacctatacaaatgtaaagaca |
50384863 |
T |
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| Q |
220 |
catttgccaaacttttggtcttgctannnnnnnggtgactgataaccaaatcataaagtaaccaaaaaagtttagtatagcacctattgttaaaactacc |
319 |
Q |
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|||||||||||||| ||||||||||| ||| ||||||||||||||||| ||||||||||| || || || |||||||||||||| ||||||||| |
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| T |
50384862 |
catttgccaaacttgtggtcttgctatttttttggtaactgataaccaaatcatgaagtaaccaaagaaattgagaatagcacctattgtcaaaactacc |
50384763 |
T |
|
| Q |
320 |
caaggtggatagagttcgttgactagtcctgcaaggacaccaacgttgctaccaaaatctttgaaaaaactaaggaggtt |
399 |
Q |
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| T |
50384762 |
caaggtggatagagttcgttgattagtcctgaaaggacaccaacgttgctaccaaagtctttgaaaaaactaaggaggtt |
50384683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 398
Target Start/End: Complemental strand, 50390211 - 50389829
Alignment:
| Q |
16 |
acctataaacaaaatcaaagcctttgtgtcatcatagtaaatagcagagtaaagctgtgtgattattgcaccactaagaccaacatagcctttaagaatt |
115 |
Q |
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|||||||| ||||||||||||||||| ||||| ||| ||||||||||||||||| |||||||| || |||||||||||||||| ||| ||||| |||||| |
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| T |
50390211 |
acctataagcaaaatcaaagcctttgagtcattataataaatagcagagtaaagttgtgtgatgatagcaccactaagaccaagatatccttttagaatt |
50390112 |
T |
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| Q |
116 |
cccaaaaccgcgccacgagattcagggaaattcttaacacaagtcacaagtgaaccagtgtttgcaaaagactgagaattagcacctatacaaatgtaaa |
215 |
Q |
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|||||||| || || |||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
50390111 |
cccaaaacagctccgcgagattcggggaaattcttaacacaagtaacaagtgaaccggtgtttgcaaaagactgagaattagcacctatgcaaatgtaaa |
50390012 |
T |
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| Q |
216 |
gacacatttgccaaacttttggtcttgctannnnnnnggtgactgataaccaaatcataaagtaaccaaaaaagtttagtatagcacctattgttaaaac |
315 |
Q |
| |
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|||||||||||||||| | ||||||||| | || | |||||||||||||| ||||||||||| || || |||||||||||||||| |||||| |
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| T |
50390011 |
gacacatttgccaaacatgtggtcttgcaattttttttgttatggataaccaaatcatgaagtaaccaaagaaattaagtatagcacctattgctaaaac |
50389912 |
T |
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| Q |
316 |
tacccaaggtggatagagttcgttgactagtcctgcaaggacaccaacgttgctaccaaaatctttgaaaaaactaaggaggt |
398 |
Q |
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| T |
50389911 |
tacccaaggtggagagatttcgttgattagtcctgcaaggataccaacattgctaccaaaatctttgaaaaaactaaggaggt |
50389829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 20 - 291
Target Start/End: Complemental strand, 50407094 - 50406823
Alignment:
| Q |
20 |
ataaacaaaatcaaagcctttgtgtcatcatagtaaatagcagagtaaagctgtgtgattattgcaccactaagaccaacatagcctttaagaattccca |
119 |
Q |
| |
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|||| |||||||||||| |||| ||||||| | ||||||||||| ||||| |||||||| || |||||||||||||||||||| ||||| | ||| |||| |
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| T |
50407094 |
ataagcaaaatcaaagcttttgggtcatcaaaataaatagcagaataaagttgtgtgataatagcaccactaagaccaacataaccttttaaaatcccca |
50406995 |
T |
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| Q |
120 |
aaaccgcgccacgagattcagggaaattcttaacacaagtcacaagtgaaccagtgtttgcaaaagactgagaattagcacctatacaaatgtaaagaca |
219 |
Q |
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| || | ||||||| ||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
50406994 |
acacaacaccacgagtttcggggaaattcttaacacaagtaacaagtgaaccagtgtttgaaaaagactgagaattagcacctatacaaatgtaaagaca |
50406895 |
T |
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| Q |
220 |
catttgccaaacttttggtcttgctannnnnnnggtgactgataaccaaatcataaagtaaccaaaaaagtt |
291 |
Q |
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||||||||||||||| ||| ||| || || |||| |||||| ||||||||||||||||| ||||| |
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| T |
50406894 |
catttgccaaactttcggttttggtatttttttagtcactgctaaccatatcataaagtaaccaaagaagtt |
50406823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 24223997 - 24223903
Alignment:
| Q |
23 |
aacaaaatcaaagcctttgtgtcatcatagtaaatagcagagtaaagctgtgtgattattgcaccactaagaccaacatagcctttaagaattcc |
117 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| | |||||||||||| |
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| T |
24223997 |
aacaaaatcaaagcctttgtgtcatcataataaatagcagagtaaagttgtgtgatgattgcaccactaagaccaacataacatttaagaattcc |
24223903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 41334043 - 41333948
Alignment:
| Q |
139 |
agggaaattcttaacacaagtcacaagtgaaccagtgtttgcaaaagactgagaattagcacctatacaaatgtaaagacacatttgccaaacttt |
234 |
Q |
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| T |
41334043 |
agggaaattcttaacacaagtaactaaagcacctgtgttagtaaaagtttgagaatttgcaccaatgcaaatataaagacacatttgccaaacttt |
41333948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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