View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3449_low_6 (Length: 377)
Name: NF3449_low_6
Description: NF3449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3449_low_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 14 - 377
Target Start/End: Original strand, 41141472 - 41141840
Alignment:
| Q |
14 |
cagagaacatactttggtaggattatcaccataattcttaacagcaataggaactacgtctcggctgagtcccatggctatatatttgttcacaattgga |
113 |
Q |
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| T |
41141472 |
cagagaacatactttggtaggattatcaccataattcttaacagcaataggaactacgtctcggctgagtcccatggctatatatttgttcacaattgga |
41141571 |
T |
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| Q |
114 |
tctgcagtagtaacctgcaaatatagtttcattttacaccatatgagttgg-----aaacaacagaagaattttatctatacacagaaaattaatgtact |
208 |
Q |
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| T |
41141572 |
tctgcagtagtaacctgcaaatatagtttcattttacaccatatgagttggaaaccaaacaacagaagaattttatctatacacagaaaattaatacact |
41141671 |
T |
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| Q |
209 |
aaacatgaaaaagcaaatagtaagtcacaacatctgcataatgaatcagaaagnnnnnnnnnnncataaacgcaaactagaataaatcggaacttcttgc |
308 |
Q |
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| T |
41141672 |
aaacatgaaaaagcaaatagtaagtcacaacatctgcataatgaatcagaaagaaaaaaaaaaacataaacgcaaactagaataaatcggaacttcttgc |
41141771 |
T |
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| Q |
309 |
tctaaattatgaaaaatcacctttgatgacggtggtgaatcagaagccttggttggaagattttctacc |
377 |
Q |
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| T |
41141772 |
tctaaattatgaaaaatcacctttgatgacggtgatgaatcagaagccttggttggaagattttctacc |
41141840 |
T |
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