View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3449_low_7 (Length: 355)
Name: NF3449_low_7
Description: NF3449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3449_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 10 - 338
Target Start/End: Original strand, 4027866 - 4028194
Alignment:
| Q |
10 |
aagaatattaccggaacgaaagagaaaagaaatgaaatgaaaagatcacagaaagcaaaattaatggccatagcctgaagaaagcaattactgaccttga |
109 |
Q |
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| T |
4027866 |
aagaatattaccggaacgaaagagaaaagaaatgaaatgaaaagatcacagaaagcaaaattaatggccatagcctgaagaaagcaattactgaccttga |
4027965 |
T |
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| Q |
110 |
atgctttggctgctagagatctgattcgactttcactcatatgaatgtcattgaccttgcagtttaaagtgtgaactaatacacattcacactcccacag |
209 |
Q |
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| T |
4027966 |
atgctttggctgctagagatctgattcgactttcactcatatgaatgtcattgaccttgcagtttaaagtgtgaactaatacacattcacactcccacag |
4028065 |
T |
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| Q |
210 |
agcattagatctgtatattattnnnnnnntattaatgtcaccattatttaaatataaaatagcaggggcaaacgttgagttgcttaacaatttacatgct |
309 |
Q |
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| T |
4028066 |
agcattagatctgtatattattaaaaaaatattaatgtcaccattatttaaatataaaatagcaggggcaaacgttgagttgcttaacaatttacatgct |
4028165 |
T |
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| Q |
310 |
ggaattatctgtatgaagcatctgacaat |
338 |
Q |
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| T |
4028166 |
ggaattatctgtatgaagcatctgacaat |
4028194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 3951006 - 3950879
Alignment:
| Q |
15 |
tattaccggaacgaaagagaaaagaaatgaaatgaaaagatcacagaaagcaaaattaatggccatagcctgaagaaagcaattactgaccttgaatgct |
114 |
Q |
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| T |
3951006 |
tattaacggaacgaaacagaaaa-aaatgaaaagaaaatatcacaaaaaattaaattaacggtcatagcaataagaaagcaatttctgaccttcaatgtt |
3950908 |
T |
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| Q |
115 |
ttggctgctagagatctgattcgactttc |
143 |
Q |
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| T |
3950907 |
ttggctgctagagatctgattcaactttc |
3950879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 65 - 199
Target Start/End: Original strand, 4215913 - 4216055
Alignment:
| Q |
65 |
caaaattaatggccatagcctgaagaaagcaattactgaccttgaatgctttggctgctagagatctgattcgactttcactcatatg--------aatg |
156 |
Q |
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| T |
4215913 |
caaaagtaatggtgatagccataagaaagctataacggaacttcaatgctttggccgctagagatctgattcaactttctatcatatggaagaagcaatg |
4216012 |
T |
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| Q |
157 |
tcattgaccttgcagtttaaagtgtgaactaatacacattcac |
199 |
Q |
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| T |
4216013 |
tcattgaccttgcatttaaaagtgtgaactcgtacacattcac |
4216055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 199
Target Start/End: Original strand, 3796811 - 3796931
Alignment:
| Q |
87 |
aagaaagcaattactgaccttgaatgctttggctgctagagatctgattcgactttcactcatatg--------aatgtcattgaccttgcagtttaaag |
178 |
Q |
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| T |
3796811 |
aagaaagctataacggaacttcaatgctttggccgctagtgatctgattcaactttctatcatatggaagaagcaatgtcattgaccttgcatttaaaag |
3796910 |
T |
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| Q |
179 |
tgtgaactaatacacattcac |
199 |
Q |
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| T |
3796911 |
tgtgaactcatacacattcac |
3796931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 3961159 - 3961099
Alignment:
| Q |
91 |
aagcaattactgaccttgaatgctttggctgctagagatctgattcgactttcactcatat |
151 |
Q |
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||||||||||| ||||| |||| ||||||||||||||||||| ||| |||||| ||||||| |
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| T |
3961159 |
aagcaattactaaccttcaatgatttggctgctagagatctgtttcaactttctctcatat |
3961099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 326
Target Start/End: Complemental strand, 3950786 - 3950699
Alignment:
| Q |
239 |
tattaatgtcaccattatttaaatataaaatagcaggggcaaacgttgagttgcttaacaatttacatgctggaattatctgtatgaa |
326 |
Q |
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||||||| ||| ||||||| | |||||||||||||||||||| ||||| |||| |||| | ||||||||||| |||||||||||| |
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| T |
3950786 |
tattaatctcatcattattcaggtataaaatagcaggggcaaaagttgacttgccaaacagtacacatgctggaaatatctgtatgaa |
3950699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 4221238 - 4221283
Alignment:
| Q |
91 |
aagcaattactgaccttgaatgctttggctgctagagatctgattc |
136 |
Q |
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| T |
4221238 |
aagcaattactgaccttaaatgctttgtttgctagagatctgattc |
4221283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 3822703 - 3822750
Alignment:
| Q |
89 |
gaaagcaattactgaccttgaatgctttggctgctagagatctgattc |
136 |
Q |
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| T |
3822703 |
gaaagaaattactgaccttaaatgctttgtttgctagagatctgattc |
3822750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 338
Target Start/End: Original strand, 4013923 - 4014015
Alignment:
| Q |
246 |
gtcaccattatttaaatataaaatagcaggggcaaacgttgagttgcttaacaatttacatgctggaattatctgtatgaagcatctgacaat |
338 |
Q |
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|||||||||||| ||||| ||||| |||| | |||||||||| |||| ||| | || ||| ||||||||||||||| || ||| ||||||| |
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| T |
4013923 |
gtcaccattattcaaataaaaaattgcagagtcaaacgttgacttgccaaactgtatagatgatggaattatctgtatcaaccatgtgacaat |
4014015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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