View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3449_low_9 (Length: 303)
Name: NF3449_low_9
Description: NF3449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3449_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 82 - 282
Target Start/End: Original strand, 3850755 - 3850955
Alignment:
| Q |
82 |
tcaaatcttgatcttataatcttacaaacgaattcgactcttttaaagtaagtaatttattttaaataatattgnnnnnnntaccggttgatatttcaat |
181 |
Q |
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| T |
3850755 |
tcaaatcttgatcttataatcttataaacgaattcaactcttttaaagtaagtaatttattttaaataatattgaaaaaaataccggtcgatatttcaat |
3850854 |
T |
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| Q |
182 |
acatttctaatgtccatgttattgataccaatagttgattaaaataaactgcttactttaaaccatcaaaatctcatacaaagattaccttatccaattc |
281 |
Q |
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| T |
3850855 |
acatttctaatgtccatgtgattgataccaatagttgattaaaataaactgcttactttaaaccatcaaaatctcatataaagattacattctccgattc |
3850954 |
T |
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| Q |
282 |
t |
282 |
Q |
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| T |
3850955 |
t |
3850955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 3848610 - 3848683
Alignment:
| Q |
16 |
atgatcacaaaatttcatctatatataggaagtgtatgagggaa-tgcaagcacgcgcatgacaacatcaaatcttgatctt |
96 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
3848610 |
atgatcacaaaatttcatctatatatatgaagtgtatgagggaagtgca--------catgacaacatcaaatcttgatctt |
3848683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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