View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3450_high_10 (Length: 309)
Name: NF3450_high_10
Description: NF3450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3450_high_10 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 31475393 - 31475085
Alignment:
| Q |
1 |
actctgaaattatgttgcccggccctaatttcatgatcgatgagttgccttcagatttaatcaactaccttcatgaaactgcgaagttcatggtaagtgc |
100 |
Q |
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| T |
31475393 |
actctgaaattatgttgcccagccttaatttcatgatcgatgagttgccttcagatttaatcaactaccttcatgaaaccgcgaagttcatggtaagtgc |
31475294 |
T |
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| Q |
101 |
tgggtttgaggaagagttttctaatgtatacatcaattgtagaaggaaatgtttggaggagggtctaataaatagattattcggcttgcagaagattaaa |
200 |
Q |
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| T |
31475293 |
tgggtttgaggaagagttttctaatgtatacatcaattgtagaaggaaatgtttggaggagtgtctaataaatagattattcggcttgcagcagattaac |
31475194 |
T |
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| Q |
201 |
atcaggaatgaaaatcaaagggtgaaatatgtagataatgtgattaaaaagtggatcacagcatcagaaatctctctgaagattctatttccatttgaac |
300 |
Q |
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| T |
31475193 |
atcatgaatgaaaatcaaagggtgaaatatgtagataatgtgattaaaaagtggatcacagcatcagaaatctctctgaagattctatttccatttgaac |
31475094 |
T |
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| Q |
301 |
aacgactct |
309 |
Q |
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| T |
31475093 |
aacgactct |
31475085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 40842775 - 40842705
Alignment:
| Q |
1 |
actctgaaattatgttgcccggccctaatttcatgatcgatgagttgccttcagatttaatcaactacctt |
71 |
Q |
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| T |
40842775 |
actctgaattgatgttgcccggccctaacttcatgatcgatgagttgcctccagatttgatcaactacctt |
40842705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 252 - 309
Target Start/End: Complemental strand, 40842702 - 40842645
Alignment:
| Q |
252 |
tggatcacagcatcagaaatctctctgaagattctatttccatttgaacaacgactct |
309 |
Q |
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| T |
40842702 |
tggatcacagcatcagaaatcgctcttaagattctatttccatttgaacaacgactct |
40842645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 60 - 304
Target Start/End: Complemental strand, 6037165 - 6036923
Alignment:
| Q |
60 |
atcaactaccttcatgaaactgcgaagttcatggtaagtgctgggtttgaggaagagttttctaatgtatacatcaattgtagaaggaaatgtttggagg |
159 |
Q |
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|||||||||||||||||||| | ||||| ||||| || ||||| ||||||||||||||||||| |||||| | | ||||||||| |||||||||||||| |
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| T |
6037165 |
atcaactaccttcatgaaaccacaaagttgatggtgagggctggatttgaggaagagttttcta-tgtatataccgattgtagaaagaaatgtttggagg |
6037067 |
T |
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| Q |
160 |
agggtctaataaatagattattcggcttgcagaagattaaaatcaggaatgaaaatcaaagggtgaaatatgtagataatgtgattaaaaagtggatcac |
259 |
Q |
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| T |
6037066 |
agtgtataataaatagattattcagctggcagaagattaacatcaagattgaacatcaaaaggtgaaatatctagataccgtgattaaaagatggatcaa |
6036967 |
T |
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| Q |
260 |
agcatcagaaatctctctgaagattctatttccatttgaacaacg |
304 |
Q |
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| T |
6036966 |
atcatcagatatctctctcaa-attttatttccatccgaacaacg |
6036923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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