View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3450_high_11 (Length: 298)
Name: NF3450_high_11
Description: NF3450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3450_high_11 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 38322008 - 38321745
Alignment:
| Q |
19 |
gtacaaccaattgcgagtacaaaatctagcatccaaattcatcggtaacatacgatctttatacttgttaaaaacgtgcaagcccatgcaaaaatccaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38322008 |
gtacaaccaattgcgagtacaaaatctagcatccaaattcatcggtaacatacgatctttatacttgttaaaaacgtgcaagcctatgcaaaaatccaaa |
38321909 |
T |
|
| Q |
119 |
tcagaagcgatagtgttaacgggaacacttaacaagtctcgagccaatattgaaagatctggaaatcgattattattactcttccaccactgtaatacat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38321908 |
tcagaagcgatagtgttaacgggaacacttaacaagtctcgagccaatattgaaagatctggaaatcgattattattactcttccaccactgtaatacat |
38321809 |
T |
|
| Q |
219 |
ccatatcttcataacaacgaaaatccaaatgtgactcagctaagtaaatatcaagttgggattt |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
38321808 |
ccatatcttcataacaacgaaaatccaaatttgactcagctaagtaaatatcaagttgggattt |
38321745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 30 - 275
Target Start/End: Complemental strand, 38301255 - 38301010
Alignment:
| Q |
30 |
tgcgagtacaaaatctagcatccaaattcatcggtaacatacgatctttatacttgttaaaaacgtgcaagcccatgcaaaaatccaaatcagaagcgat |
129 |
Q |
| |
|
|||||||||| | ||||| |||| ||||||||| |||||||||||||||||||||||||| ||| | ||||||||||||| || ||||| ||||||| |
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|
| T |
38301255 |
tgcgagtacacattctagtttccacattcatcggcaacatacgatctttatacttgttaaagacgcgtgagcccatgcaaaactcaaaatcggaagcgac |
38301156 |
T |
|
| Q |
130 |
agtgttaacgggaacacttaacaagtctcgagccaatattgaaagatctggaaatcgattattattactcttccaccactgtaatacatccatatcttca |
229 |
Q |
| |
|
||| ||| |||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38301155 |
ggtggtaatgggaacacttaacaagtcgcaagccaatattgatagatctggaaatcgattattattactcttccaccactgtaatacatccatatcttca |
38301056 |
T |
|
| Q |
230 |
taacaacgaaaatccaaatgtgactcagctaagtaaatatcaagtt |
275 |
Q |
| |
|
| ||||||||||||||||| ||||||| ||||||||| |||||||| |
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|
| T |
38301055 |
tcacaacgaaaatccaaatttgactcatctaagtaaacatcaagtt |
38301010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 38307166 - 38306909
Alignment:
| Q |
19 |
gtacaaccaattgcgagtacaaaatctagcatccaaattcatcggtaacatacgatctttatacttgttaaaaacgtgcaagcccatgcaaaaatccaaa |
118 |
Q |
| |
|
||||| |||| |||||| ||||| ||||| |||| || |||||| |||||||||||||||||||||||||| ||| | ||||||||||||| || ||| |
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|
| T |
38307166 |
gtacagccaactgcgagcacaaattctagtttccacatccatcggcaacatacgatctttatacttgttaaacacgcgtgagcccatgcaaaattcaaaa |
38307067 |
T |
|
| Q |
119 |
tcagaagcgatagtgttaacgggaacacttaacaagtctcgagccaatattgaaagatctggaaatcgattattattactcttccaccactgtaatacat |
218 |
Q |
| |
|
|||||||| | |||| ||| |||||||||||||||||| | ||||| |||||| ||||||||| |||||| |||||||||||||||||| |||||||||| |
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|
| T |
38307066 |
tcagaagccacagtggtaatgggaacacttaacaagtcacaagccagtattgatagatctggatatcgatcattattactcttccaccattgtaatacat |
38306967 |
T |
|
| Q |
219 |
ccatatcttcataacaacgaaaatccaaatgtgactcagctaagtaaatatcaagttg |
276 |
Q |
| |
|
|||||||||||| |||| ||||| |||||| ||||||| ||||||||| ||||||||| |
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|
| T |
38306966 |
ccatatcttcattacaaagaaaacccaaatctgactcatctaagtaaacatcaagttg |
38306909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 22 - 282
Target Start/End: Complemental strand, 38309905 - 38309645
Alignment:
| Q |
22 |
caaccaattgcgagtacaaaatctagcatccaaattcatcggtaacatacgatctttatacttgttaaaaacgtgcaagcccatgcaaaaatccaaatca |
121 |
Q |
| |
|
||||||| |||||||||| | ||||| |||| ||| | || ||||||||||||||||| |||||||| || | ||||||||||||| || |||||| |
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|
| T |
38309905 |
caaccaagtgcgagtacatattctagtttccacattatttggcaacatacgatctttatatttgttaaacacacgtgagcccatgcaaaactcaaaatca |
38309806 |
T |
|
| Q |
122 |
gaagcgatagtgttaacgggaacacttaacaagtctcgagccaatattgaaagatctggaaatcgattattattactcttccaccactgtaatacatcca |
221 |
Q |
| |
|
|| |||| |||| ||| ||||| |||||||||||| | |||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
38309805 |
gatgcgacagtggtaatgggaaaacttaacaagtcgcaggccagaattgatagatccggaaatcgattattatttctcttccaccactgtaatacatcca |
38309706 |
T |
|
| Q |
222 |
tatcttcataacaacgaaaatccaaatgtgactcagctaagtaaatatcaagttgggattt |
282 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||| ||||||||| ||||||||| ||||| |
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|
| T |
38309705 |
tatcttcataacaatgaaaatccaaatttgactcatctaagtaaacatcaagttgagattt |
38309645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 23 - 282
Target Start/End: Complemental strand, 38317915 - 38317656
Alignment:
| Q |
23 |
aaccaattgcgagtacaaaatctagcatccaaattcatcggtaacatacgatctttatacttgttaaaaacgtgcaagcccatgcaaaaatccaaatcag |
122 |
Q |
| |
|
|||||| |||||||||| | ||||| |||| |||| | || | | ||||||||| |||||||||||| || | | ||||||||||| || |||||| |
|
|
| T |
38317915 |
aaccaactgcgagtacagattctagtttccacattcgtgggcagcgtacgatcttcatacttgttaaagacacgtgaacccatgcaaaattcagaatcag |
38317816 |
T |
|
| Q |
123 |
aagcgatagtgttaacgggaacacttaacaagtctcgagccaatattgaaagatctggaaatcgattattattactcttccaccactgtaatacatccat |
222 |
Q |
| |
|
|||| | |||| || |||||||||||||||||| | ||| |||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||| |
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|
| T |
38317815 |
aagcaacagtggcaatgggaacacttaacaagtcgcaagctaatattgatagatccggaaatcgattattatttctcttccaccattgtaatacatccat |
38317716 |
T |
|
| Q |
223 |
atcttcataacaacgaaaatccaaatgtgactcagctaagtaaatatcaagttgggattt |
282 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||| ||||||||| ||||||||| ||||| |
|
|
| T |
38317715 |
atcttcataacaatgaaaatccaaatttgactcatctaagtaaacatcaagttgagattt |
38317656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 38314509 - 38314253
Alignment:
| Q |
19 |
gtacaaccaattgcgagtacaaaatctagcatccaaattcatcggtaacatacgatctttatacttgttaaaaacgtgcaagcccatgcaaaaatccaaa |
118 |
Q |
| |
|
||||| |||| ||||||| |||| ||||| |||| || ||| |||||||| ||||||||||||||||| || || | ||||||||||||| || ||| |
|
|
| T |
38314509 |
gtacagccaactgcgagtgcaaattctagtttccacatccattggtaacatgcgatctttatacttgtttaacacacgtgagcccatgcaaaattcaaaa |
38314410 |
T |
|
| Q |
119 |
tcagaagcgatagtgttaacgggaacacttaacaagtctcgagccaatattgaaagatctggaaatcgattattattactcttccaccactgtaatacat |
218 |
Q |
| |
|
|||||||| | ||| || |||||||||||||||||| | |||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
38314409 |
tcagaagccactgtggcaatgggaacacttaacaagtcgcaagccaatattgatagatctggaaatcgatttgaattactcttccaccattgtaatacat |
38314310 |
T |
|
| Q |
219 |
ccatatcttcataacaacgaaaatccaaatgtgactcagctaagtaaatatcaagtt |
275 |
Q |
| |
|
|||||||||||||| ||| ||||| ||||| |||||| | ||||||| |||||||| |
|
|
| T |
38314309 |
ccatatcttcataagaaccaaaattcaaatctgactcgtcaaagtaaacatcaagtt |
38314253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 38326720 - 38326463
Alignment:
| Q |
19 |
gtacaaccaattgcgagtacaaaatctagcatccaaattcatcggtaacatacgatctttatacttgttaaaaacgtgcaagcccatgcaaaaatccaaa |
118 |
Q |
| |
|
|||||||||| ||| |||||| | ||| || |||| |||||| || | |||| | ||||||||||| | ||| ||| | ||||||||||| |||||| |
|
|
| T |
38326720 |
gtacaaccaactgcaagtacagattctggcttccacattcataggcagcataaggtctttatacttttcaaatacgcgtgcacccatgcaaaattccaaa |
38326621 |
T |
|
| Q |
119 |
tcagaagcgatagtgttaacgggaacacttaacaagtctcgagccaatattgaaagatctggaaatcgattattattactcttccaccactgtaatacat |
218 |
Q |
| |
|
||||| |||| |||| || |||||||||||||||||| | |||||| ||||| ||||||||||||| ||||| ||||||||||||||| | |||||||| |
|
|
| T |
38326620 |
tcagatgcgacagtggcaatgggaacacttaacaagtcacaagccaaaattgatagatctggaaatcaattataattactcttccaccattctaatacat |
38326521 |
T |
|
| Q |
219 |
ccatatcttcataacaacgaaaatccaaatgtgactcagctaagtaaatatcaagttg |
276 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||| ||| | ||||||| ||||||||| |
|
|
| T |
38326520 |
ccatgtcttcataacaacgaaaatccaaacttgattcatccaagtaaacatcaagttg |
38326463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 38849417 - 38849674
Alignment:
| Q |
19 |
gtacaaccaattgcgagtacaaaatctagcatccaaattcatcggtaacatacgatctttatacttgttaaaaacgtgcaagcccatgcaaaaatccaaa |
118 |
Q |
| |
|
|||||||||| |||||||||||| |||||| |||| ||||||||| |||||||||||||||||||||||||| || | ||||||||||||| || || |
|
|
| T |
38849417 |
gtacaaccaactgcgagtacaaattctagcttccacattcatcggcaacatacgatctttatacttgttaaagacacgtgagcccatgcaaaattcagaa |
38849516 |
T |
|
| Q |
119 |
tcagaagcgatagtgttaacgggaacacttaacaagtctcgagccaatattgaaagatctggaaatcgattattattactcttccaccactgtaatacat |
218 |
Q |
| |
|
|||||||| | || | || |||||||||||||||||| | ||||||||||| ||||| |||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
38849517 |
tcagaagctacagcggcaatgggaacacttaacaagtcgcaggccaatattgatagatccggaaatcgatcattattactcttccaccattgtaatacat |
38849616 |
T |
|
| Q |
219 |
ccatatcttcataacaacgaaaatccaaatgtgactcagctaagtaaatatcaagttg |
276 |
Q |
| |
|
|||| ||| |||||||||||||||||||| ||||||| ||||||||| ||||||||| |
|
|
| T |
38849617 |
ccatttctgcataacaacgaaaatccaaaactgactcatctaagtaaacatcaagttg |
38849674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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