View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3450_high_19 (Length: 246)
Name: NF3450_high_19
Description: NF3450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3450_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 29 - 228
Target Start/End: Original strand, 32707670 - 32707869
Alignment:
| Q |
29 |
cctaaactcataactctattgttttaataattaagacaataagcacttgaatgatgttggttcaatataaactccatatttatttttcgttgttttaacc |
128 |
Q |
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| T |
32707670 |
cctaaactcataactctattgtttcaataattaagacaataatcacttgaatgatgttggttcaatataaactacatatttatttttcgttgttttaacc |
32707769 |
T |
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| Q |
129 |
aaattgatatcaattaagttattattccagtcgcgatcactttctaattttagcaaaataaaattttaaacattgcatgattagtactctaggtacatag |
228 |
Q |
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| T |
32707770 |
aaattgatatcaattaagatattattccagtcacgatcactttctaattttagcaaaataaaattttaaacattgcatgattagtactctaggtacatag |
32707869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 29726250 - 29726183
Alignment:
| Q |
80 |
tgatgttggttcaatataaactccatatttatttttcgttgttttaaccaaattgatatcaattaagt |
147 |
Q |
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| T |
29726250 |
tgatgtcggttcaatacaaactacatatttattttctgttgttttaatcaaactgctatcaattaagt |
29726183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 33060649 - 33060597
Alignment:
| Q |
103 |
catatttatttttcgttgttttaaccaaattgatatcaattaagttattattc |
155 |
Q |
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| T |
33060649 |
catatttatcttttgtcgttttgatcaaattgatatcaattaagttattattc |
33060597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 7779848 - 7779921
Alignment:
| Q |
81 |
gatgttggttcaatataaactccatatttatttttcgttgttttaaccaaattgatatcaattaagttattatt |
154 |
Q |
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| T |
7779848 |
gatgttggtttaatacgagctacatatttattttccatagttttaatcaaattgatatcagttaagtcattatt |
7779921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 14063598 - 14063638
Alignment:
| Q |
104 |
atatttatttttcgttgttttaaccaaattgatatcaatta |
144 |
Q |
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| T |
14063598 |
atatttatttttcgttgttttaatcaaacttatatcaatta |
14063638 |
T |
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