View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3450_high_20 (Length: 239)

Name: NF3450_high_20
Description: NF3450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3450_high_20
NF3450_high_20
[»] chr5 (14 HSPs)
chr5 (1-222)||(31475504-31475725)
chr5 (1-222)||(40842886-40843107)
chr5 (84-220)||(31505542-31505678)
chr5 (125-220)||(31281741-31281836)
chr5 (118-212)||(31285034-31285128)
chr5 (118-222)||(31407102-31407206)
chr5 (118-220)||(31332440-31332542)
chr5 (87-220)||(31279134-31279267)
chr5 (125-220)||(31381225-31381320)
chr5 (82-220)||(31317667-31317805)
chr5 (145-219)||(31396069-31396143)
chr5 (118-200)||(31288791-31288873)
chr5 (125-217)||(31643567-31643659)
chr5 (144-219)||(31416252-31416327)
[»] chr4 (3 HSPs)
chr4 (116-215)||(6037665-6037764)
chr4 (145-220)||(6030006-6030082)
chr4 (25-74)||(6037334-6037383)
[»] chr3 (1 HSPs)
chr3 (138-220)||(25708758-25708840)


Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 31475504 - 31475725
Alignment:
Q  1 ttagctagatgtggcgaatctacatcaataattactgaattttcatcttggaattcagataatccaatttcttctacagatgaaaaggaagaacgaaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31475504 ttagctagatgtggcgaatctacatcaataattactgaattttcatcttggaattcagataatccaatttcttctacagatgaaaaggaagaacgaaaaa 31475603  T
Q  101 tgagaagggagtaactcaaacctactccaataatgaataactccaatttaatcttcatgagtaacacagttagacatccgagaaaaaagtaaagaagatc 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31475604 tgagaagggagtaactcaaacctgctccaataatgaataactccaatttaatcttcatgagtaacacagttagacatccgagaaaaaagtaaagaagatc 31475703  T
Q  201 cacttcgaatccacactgagat 222  Q
    ||||||||||||||||||||||    
T  31475704 cacttcgaatccacactgagat 31475725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 40842886 - 40843107
Alignment:
Q  1 ttagctagatgtggcgaatctacatcaataattactgaattttcatcttggaattcagataatccaatttcttctacagatgaaaaggaagaacgaaaaa 100  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||    
T  40842886 ttagctagttgtggcgaatctacttcaataattactgaattttcatcttggaattcacaaaatccaatttcttctacagaagaaaaggaagaacgaaaaa 40842985  T
Q  101 tgagaagggagtaactcaaacctactccaataatgaataactccaatttaatcttcatgagtaacacagttagacatccgagaaaaaagtaaagaagatc 200  Q
    | | |||||||||| |||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  40842986 taataagggagtaaatcaaacctgctccaataatgaataactggaatttaatcttcatgagtaacacagttagacatccaagaaaaaagtaaagaagatc 40843085  T
Q  201 cacttcgaatccacactgagat 222  Q
    ||||||||||||||| ||||||    
T  40843086 cacttcgaatccacaatgagat 40843107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 84 - 220
Target Start/End: Original strand, 31505542 - 31505678
Alignment:
Q  84 aaaggaagaacgaaaaatgagaagggagtaactcaaacctactccaataatgaataactccaatttaatcttcatgagtaacacagttagacatccgaga 183  Q
    |||| ||||||||| ||| | |||||| ||||| |||||  |||||| ||||||||||| ||||||||||||||| |||   ||| ||| ||||||||||    
T  31505542 aaagtaagaacgaataataataagggaataactgaaaccagctccaacaatgaataactgcaatttaatcttcattagttgtacaattaaacatccgaga 31505641  T
Q  184 aaaaagtaaagaagatccacttcgaatccacactgag 220  Q
    |||||||||||||||||||| || ||||| |||||||    
T  31505642 aaaaagtaaagaagatccacctcaaatccgcactgag 31505678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 125 - 220
Target Start/End: Complemental strand, 31281836 - 31281741
Alignment:
Q  125 ctccaataatgaataactccaatttaatcttcatgagtaacacagttagacatccgagaaaaaagtaaagaagatccacttcgaatccacactgag 220  Q
    |||||| ||||||||||| |||||||| ||||||||||  |||| ||| |||||||||||||| |||||||||||||||| ||||||| |||||||    
T  31281836 ctccaagaatgaataactgcaatttaaccttcatgagttgcacaattaaacatccgagaaaaatgtaaagaagatccactacgaatccgcactgag 31281741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 31285128 - 31285034
Alignment:
Q  118 aaacctactccaataatgaataactccaatttaatcttcatgagtaacacagttagacatccgagaaaaaagtaaagaagatccacttcgaatcc 212  Q
    |||||| |||||| ||||||||||| |||||||||||||||||||  |||| ||| ||||||||||||||||||||||| ||| ||||| |||||    
T  31285128 aaacctgctccaacaatgaataactgcaatttaatcttcatgagttgcacaattaaacatccgagaaaaaagtaaagaaaatcgacttcaaatcc 31285034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 31407102 - 31407206
Alignment:
Q  118 aaacctactccaataatgaataactccaatttaatcttcatgagtaacacagttagacatccgagaaaaaagtaaagaagatccacttcgaatccacact 217  Q
    |||||| |||||| ||||| ||| | || ||||||||||||||||  || | |||||||||| || ||||||||||||||||||||||||| ||||||||    
T  31407102 aaacctgctccaacaatgactaattgcagtttaatcttcatgagttgcataattagacatccaaggaaaaagtaaagaagatccacttcgattccacact 31407201  T
Q  218 gagat 222  Q
    |||||    
T  31407202 gagat 31407206  T

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Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 118 - 220
Target Start/End: Complemental strand, 31332542 - 31332440
Alignment:
Q  118 aaacctactccaataatgaataactccaatttaatcttcatgagtaacacagttagacatccgagaaaaaagtaaagaagatccacttcgaatccacact 217  Q
    |||||| |||||| ||||||||||| |||||||||||||||||||  |||| |||| | ||| || ||||| ||||||||||| | ||||||||| ||||    
T  31332542 aaacctgctccaagaatgaataactgcaatttaatcttcatgagttgcacaattaggcttcctaggaaaaaataaagaagatcgatttcgaatccgcact 31332443  T
Q  218 gag 220  Q
    |||    
T  31332442 gag 31332440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 220
Target Start/End: Original strand, 31279134 - 31279267
Alignment:
Q  87 ggaagaacgaaaaatgagaagggagtaactcaaacctactccaataatgaataactccaatttaatcttcatgagtaacacagttagacatccgagaaaa 186  Q
    ||||||||||| ||| | |||  |||| || |||||  |||||| |||||||||   || ||||||||||||||||   ||| |||||||||| ||||||    
T  31279134 ggaagaacgaagaataataagcaagtagctgaaaccagctccaagaatgaataataacagtttaatcttcatgagttgtacaattagacatccaagaaaa 31279233  T
Q  187 aagtaaagaagatccacttcgaatccacactgag 220  Q
    |||||||||||||| ||||| ||||| |||||||    
T  31279234 aagtaaagaagatcaacttcaaatccgcactgag 31279267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 125 - 220
Target Start/End: Complemental strand, 31381320 - 31381225
Alignment:
Q  125 ctccaataatgaataactccaatttaatcttcatgagtaacacagttagacatccgagaaaaaagtaaagaagatccacttcgaatccacactgag 220  Q
    |||||| ||||||||||| |||||||||||||||||||  |||| |||| | ||| || ||||| ||||||||||| | ||||||||| |||||||    
T  31381320 ctccaagaatgaataactgcaatttaatcttcatgagttgcacaattaggcttcctaggaaaaaataaagaagatcgatttcgaatccgcactgag 31381225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 220
Target Start/End: Complemental strand, 31317805 - 31317667
Alignment:
Q  82 gaaaaggaagaacgaaaaatgagaagggagtaactcaaacctactccaataatgaataactccaatttaatcttcatgagtaacacagttagacatccga 181  Q
    ||||| |||||||| | ||||| |||| | || || |||||  |||||| ||| ||||||| ||| |||||||||||||||   ||| |||||||||| |    
T  31317805 gaaaatgaagaacggagaatgataaggcaatagctaaaaccagctccaagaattaataactgcaacttaatcttcatgagttgaacaattagacatccca 31317706  T
Q  182 gaaaaaagtaaagaagatccacttcgaatccacactgag 220  Q
    | ||||| ||||||||||| | ||| ||||| |||||||    
T  31317705 ggaaaaaataaagaagatcaatttcaaatccccactgag 31317667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 31396143 - 31396069
Alignment:
Q  145 aatttaatcttcatgagtaacacagttagacatccgagaaaaaagtaaagaagatccacttcgaatccacactga 219  Q
    ||||||||||||||||||   ||| ||| |||||||||| ||||||| | |||||||||||| ||||||||||||    
T  31396143 aatttaatcttcatgagttgtacaattaaacatccgagataaaagtacataagatccacttcaaatccacactga 31396069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 118 - 200
Target Start/End: Complemental strand, 31288873 - 31288791
Alignment:
Q  118 aaacctactccaataatgaataactccaatttaatcttcatgagtaacacagttagacatccgagaaaaaagtaaagaagatc 200  Q
    |||||| |||||| ||||||||||| |||||||||||||| ||||  |||  |||||||||| || ||| | |||||||||||    
T  31288873 aaacctgctccaaaaatgaataactgcaatttaatcttcaagagttgcaccattagacatccaaggaaacaataaagaagatc 31288791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 31643567 - 31643659
Alignment:
Q  125 ctccaataatgaataactccaatttaatcttcatgagtaacacagttagacatccgagaaaaaagtaaagaagatccacttcgaatccacact 217  Q
    |||||| |||||||||   || ||||||||||||||||   ||| |||||||||| || ||||||||||||||||| | ||| ||||| ||||    
T  31643567 ctccaagaatgaataagggcagtttaatcttcatgagttggacaattagacatccaaggaaaaagtaaagaagatcgaattcaaatccgcact 31643659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 219
Target Start/End: Original strand, 31416252 - 31416327
Alignment:
Q  144 caatttaatcttcatgagtaacacagttagacatccgagaaaaaagtaaagaagatccacttcgaatccacactga 219  Q
    |||||||||||||||||||   ||| ||| |||||| ||| ||||||| | |||||| ||||| ||||||||||||    
T  31416252 caatttaatcttcatgagttgtacaattaaacatcctagataaaagtacataagatcaacttcaaatccacactga 31416327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 6037665 - 6037764
Alignment:
Q  116 tcaaacctactccaataatgaataactccaatttaatcttcatgagtaacacagttagacatccgagaaaaaagtaaagaagatccacttcgaatccaca 215  Q
    |||||| | |||||||| ||||||||| ||||| |||| |||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||    
T  6037665 tcaaacttgctccaatattgaataactgcaattgaatcgtcatgagtaacacagttagacatctgagaaaaaagtaaaaaagattcacttcgaatccaca 6037764  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 6030006 - 6030082
Alignment:
Q  145 aatttaatcttcatgagtaacacagttagacatcc-gagaaaaaagtaaagaagatccacttcgaatccacactgag 220  Q
    ||||||||||||||||||| || |||||||||||| ||| |||| |||||||||||||||||||||||| |||||||    
T  6030006 aatttaatcttcatgagtatcatagttagacatcctgagtaaaatgtaaagaagatccacttcgaatccgcactgag 6030082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 6037334 - 6037383
Alignment:
Q  25 tcaataattactgaattttcatcttggaattcagataatccaatttcttc 74  Q
    ||||||||||||| |||||||||||||| ||||||  |||||||||||||    
T  6037334 tcaataattactggattttcatcttggagttcagagtatccaatttcttc 6037383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 220
Target Start/End: Complemental strand, 25708840 - 25708758
Alignment:
Q  138 taactccaatttaatcttcatgagtaacacagttagacatccgagaaaaaagtaaagaagatccacttcgaatccacactgag 220  Q
    ||||| |||||| | ||||||||||  |||| |||||||||| |||||||| ||||||||||| ||||| |||||||||||||    
T  25708840 taactgcaattttaccttcatgagttgcacaattagacatccaagaaaaaaataaagaagatcaacttcaaatccacactgag 25708758  T

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