View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3450_high_22 (Length: 227)
Name: NF3450_high_22
Description: NF3450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3450_high_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 2639979 - 2639783
Alignment:
| Q |
18 |
atatttaattgtgcatattttgaagccaagatgaatnnnnnnnn--ctgatttatcctcttgttccatgctcttgaagcctcctttaaaccatctagtgc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2639979 |
atatttaattgtgcatattttgaagccaagatgaataaaaaaaaaactgatctatcctcttgttccatgctcttgaagcctcctttaaaccatctagtgc |
2639880 |
T |
|
| Q |
116 |
ctcatgcaaattatacaccatatg----ttcgtttttacctcaaatcctgaaagttgagtgacaaaaaagagttatctctaatgttccattgaccat |
208 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
2639879 |
ctcatgcaaattatacaccatatgttacttcgcttttacctcaaatcctgaaggttgagtgacaaaaaagagttttctctaatggtccattgaccat |
2639783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University