View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3450_high_24 (Length: 203)

Name: NF3450_high_24
Description: NF3450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3450_high_24
NF3450_high_24
[»] chr8 (3 HSPs)
chr8 (51-184)||(16105913-16106046)
chr8 (53-184)||(16113155-16113286)
chr8 (53-184)||(16101569-16101694)
[»] chr4 (5 HSPs)
chr4 (51-137)||(12206858-12206944)
chr4 (50-137)||(31689271-31689358)
chr4 (97-184)||(12210853-12210940)
chr4 (150-184)||(31689223-31689257)
chr4 (151-184)||(12206810-12206843)
[»] chr3 (4 HSPs)
chr3 (53-137)||(29032696-29032780)
chr3 (57-181)||(17615071-17615195)
chr3 (69-178)||(17619051-17619160)
chr3 (105-184)||(54285758-54285837)
[»] chr1 (4 HSPs)
chr1 (152-184)||(42026942-42026974)
chr1 (152-184)||(42031683-42031715)
chr1 (104-136)||(42026989-42027021)
chr1 (104-136)||(42031636-42031668)


Alignment Details
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 51 - 184
Target Start/End: Original strand, 16105913 - 16106046
Alignment:
Q  51 gtgaccttcagaattttgggggaaggaaaaaaggaaaattaaaagttaattgaaattaccgttttacccttcagttttaatttcctcnnnnnnnnnnnnc 150  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |    
T  16105913 gtgaccttcagaattctgggggaagaaaaaaaggaaaattaaaagttaattgaaattaccgttttacccttcagttttaatttcctcaaaaaacaaaaac 16106012  T
Q  151 gtgggcatttgtgtccaagtgaaaaggtgcaggt 184  Q
    ||||||||||||||||||||||||||||||||||    
T  16106013 gtgggcatttgtgtccaagtgaaaaggtgcaggt 16106046  T

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Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 53 - 184
Target Start/End: Original strand, 16113155 - 16113286
Alignment:
Q  53 gaccttcagaattttgggggaaggaaaaaaggaaaattaaaagttaattgaaattaccgttttacccttcagttttaatttcctcnnnnnnnnnnnncgt 152  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||    
T  16113155 gaccttcagaattctgggggaagaaaaaaaggaaaattaaaagttaattgaaattaccgttttacccttcagttttaatttcctcaaaaaacaaaaacgt 16113254  T
Q  153 gggcatttgtgtccaagtgaaaaggtgcaggt 184  Q
    ||||||||||||||||||||||||||||||||    
T  16113255 gggcatttgtgtccaagtgaaaaggtgcaggt 16113286  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 53 - 184
Target Start/End: Complemental strand, 16101694 - 16101569
Alignment:
Q  53 gaccttcagaattttgggggaaggaaa-aaaggaaaattaaaagttaattgaaattaccgttttacccttcagttttaatttcctcnnnnnnnnnnnncg 151  Q
    ||||||||||||| ||||||||| ||| |||||||||||||       ||||||||||| ||||||||||| ||||||||||||||            ||    
T  16101694 gaccttcagaattctgggggaagaaaagaaaggaaaattaa-------ttgaaattaccattttacccttcggttttaatttcctcaaaaaacaaaaacg 16101602  T
Q  152 tgggcatttgtgtccaagtgaaaaggtgcaggt 184  Q
    |||||||||||||||||||||||||||||||||    
T  16101601 tgggcatttgtgtccaagtgaaaaggtgcaggt 16101569  T

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Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 51 - 137
Target Start/End: Complemental strand, 12206944 - 12206858
Alignment:
Q  51 gtgaccttcagaattttgggggaaggaaaaaaggaaaattaaaagttaattgaaattaccgttttacccttcagttttaatttcctc 137  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12206944 gtgaccttcagaattctgggggaagaaaaaaaggaaaattaaaagttaattgaaattaccgttttacccttcagttttaatttcctc 12206858  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 31689358 - 31689271
Alignment:
Q  50 cgtgaccttcagaattttgggggaaggaaaaaaggaaaattaaaagttaattgaaattaccgttttacccttcagttttaatttcctc 137  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31689358 cgtgaccttcagaattctgggggaagaaaaaaaggaaaattaaaagttaattgaaattaccattttacccttcagttttaatttcctc 31689271  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 97 - 184
Target Start/End: Original strand, 12210853 - 12210940
Alignment:
Q  97 taattgaaattaccgttttacccttcagttttaatttcctcnnnnnnnnnnnncgtgggcatttgtgtccaagtgaaaaggtgcaggt 184  Q
    ||||||||||||||||||||||||||| |||||||||||||             ||||||||||||||||||||||||||||||||||    
T  12210853 taattgaaattaccgttttacccttcaattttaatttcctcaaaaaacaaaaatgtgggcatttgtgtccaagtgaaaaggtgcaggt 12210940  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Complemental strand, 31689257 - 31689223
Alignment:
Q  150 cgtgggcatttgtgtccaagtgaaaaggtgcaggt 184  Q
    ||||||||||||||||| |||||||||||||||||    
T  31689257 cgtgggcatttgtgtccgagtgaaaaggtgcaggt 31689223  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 12206843 - 12206810
Alignment:
Q  151 gtgggcatttgtgtccaagtgaaaaggtgcaggt 184  Q
    |||| |||||||||||||||||||||||||||||    
T  12206843 gtggccatttgtgtccaagtgaaaaggtgcaggt 12206810  T

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Target: chr3 (Bit Score: 73; Significance: 1e-33; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 29032696 - 29032780
Alignment:
Q  53 gaccttcagaattttgggggaaggaaaaaaggaaaattaaaagttaattgaaattaccgttttacccttcagttttaatttcctc 137  Q
    |||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29032696 gaccttcagagttctgggggaagaaaaaaaggaaaattaaaagttaattgaaattaccgttttacccttcagttttaatttcctc 29032780  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 57 - 181
Target Start/End: Complemental strand, 17615195 - 17615071
Alignment:
Q  57 ttcagaattttgggggaaggaaaaaaggaaaattaaaagttaattgaaattaccgttttacccttcagttttaatttcctcnnnnnnnnnnnncgtgggc 156  Q
    |||||| || |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||| |||    
T  17615195 ttcagagttctggggggagaaaaaaaggaaaattaaaagttaattgaaattaccgttttacccttcagttttaatttcctcaaaaaacaaaaacgttggc 17615096  T
Q  157 atttgtgtccaagtgaaaaggtgca 181  Q
    |||||||||||||||||||||||||    
T  17615095 atttgtgtccaagtgaaaaggtgca 17615071  T

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Target: chr3; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 69 - 178
Target Start/End: Original strand, 17619051 - 17619160
Alignment:
Q  69 ggggaaggaaaaaaggaaaattaaaagttaattgaaattaccgttttacccttcagttttaatttcctcnnnnnnnnnnnncgtgggcatttgtgtccaa 168  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||    
T  17619051 ggggaagaaaaaaaggaaaattaaaagttaattgaaattaccgttttacccttcagttttaatttcctaaaaaaacataaacgtgggcatttgtgtccaa 17619150  T
Q  169 gtgaaaaggt 178  Q
    ||||||||||    
T  17619151 gtgaaaaggt 17619160  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 54285758 - 54285837
Alignment:
Q  105 attaccgttttacccttcagttttaatttcctcnnnnnnnnnnnncgtgggcatttgtgtccaagtgaaaaggtgcaggt 184  Q
    |||||||||||||||||||||||||||||||||            ||||||||||||||||||| |||||||||| ||||    
T  54285758 attaccgttttacccttcagttttaatttcctcaaaaaacaaaaacgtgggcatttgtgtccaaatgaaaaggtgtaggt 54285837  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 42026974 - 42026942
Alignment:
Q  152 tgggcatttgtgtccaagtgaaaaggtgcaggt 184  Q
    |||||||||||||||||||||||||||||||||    
T  42026974 tgggcatttgtgtccaagtgaaaaggtgcaggt 42026942  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 42031683 - 42031715
Alignment:
Q  152 tgggcatttgtgtccaagtgaaaaggtgcaggt 184  Q
    |||||||||||||||||||||||||||||||||    
T  42031683 tgggcatttgtgtccaagtgaaaaggtgcaggt 42031715  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 42027021 - 42026989
Alignment:
Q  104 aattaccgttttacccttcagttttaatttcct 136  Q
    ||||||||||||||||||| |||||||||||||    
T  42027021 aattaccgttttacccttccgttttaatttcct 42026989  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 42031636 - 42031668
Alignment:
Q  104 aattaccgttttacccttcagttttaatttcct 136  Q
    ||||||||||||||||||| |||||||||||||    
T  42031636 aattaccgttttacccttccgttttaatttcct 42031668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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