View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3450_high_3 (Length: 445)

Name: NF3450_high_3
Description: NF3450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3450_high_3
NF3450_high_3
[»] chr3 (17 HSPs)
chr3 (1-202)||(10377906-10378107)
chr3 (255-430)||(10378160-10378335)
chr3 (1-197)||(10075126-10075322)
chr3 (278-422)||(10365736-10365879)
chr3 (17-202)||(10136676-10136861)
chr3 (69-202)||(10365502-10365635)
chr3 (35-202)||(10134041-10134208)
chr3 (278-381)||(10136458-10136561)
chr3 (278-381)||(10133837-10133940)
chr3 (112-198)||(10102219-10102305)
chr3 (112-198)||(10213142-10213228)
chr3 (285-381)||(10212920-10213016)
chr3 (91-202)||(10221242-10221353)
chr3 (285-381)||(10101997-10102093)
chr3 (1-66)||(10221351-10221416)
chr3 (19-72)||(10102324-10102377)
chr3 (19-72)||(10213247-10213300)
[»] chr4 (2 HSPs)
chr4 (1-150)||(25793598-25793747)
chr4 (303-412)||(25793300-25793409)
[»] scaffold0045 (1 HSPs)
scaffold0045 (83-202)||(85754-85873)
[»] chr5 (2 HSPs)
chr5 (91-202)||(26816600-26816711)
chr5 (1-66)||(26816709-26816774)


Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 10377906 - 10378107
Alignment:
Q  1 agaggaccctttaagcgcacggtccacagaaggtgacatatcatgaggtgtgttgctaatgaacaatccatataatcccaaaccaaaaatcaacataaca 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10377906 agaggaccctttaagcgcacggtcaacagaaggtgacatatcatgaggtgtgttgctaatgaacaatccatataagcccaaaccaaaaatcaacataaca 10378005  T
Q  101 gtaccagtaagataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatcagaaatttgg 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10378006 gtaccagcaagataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatcagaaatttgg 10378105  T
Q  201 ac 202  Q
    ||    
T  10378106 ac 10378107  T

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Target: chr3; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 255 - 430
Target Start/End: Original strand, 10378160 - 10378335
Alignment:
Q  255 ttattttcatgttctttgtttagataatgatggagaataatattcttcccaattgcttcaaccaagtgtagaaccatctttccggcgtgaactcctttga 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10378160 ttattttcatgttctttgtttagataatgatggagaataatattcttcccaattgcttcaaccaagtgtagaaccatctttccggcgtgaactcctttga 10378259  T
Q  355 caccacttgaccaatagactttgtatgtatcgacaatataaatgcaaccctaaaatgaagcatgaatagttaatgt 430  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10378260 caccacttgaccaatagactttgtatgtatcgacaatataaacgcaaccctaaaatgaagcatgaatagttaatgt 10378335  T

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Target: chr3; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 10075322 - 10075126
Alignment:
Q  1 agaggaccctttaagcgcacggtccacagaaggtgacatatcatgaggtgtgttgctaatgaacaatccatataatcccaaaccaaaaatcaacataaca 100  Q
    |||||| |||||||| | ||||||||||||| |||| || ||||||||| ||||||| || |||||||||||||| ||||    ||||||||||||||||    
T  10075322 agaggatcctttaagggaacggtccacagaacgtgaaatgtcatgaggtatgttgctgataaacaatccatataaacccattataaaaatcaacataaca 10075223  T
Q  101 gtaccagtaagataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatcagaaatt 197  Q
    ||||||| |||||||||||||||||||  | |||||||||||||||||| |||| | ||||||||||| |||||||||||||| |||||||||||||    
T  10075222 gtaccagcaagataaacatctgcagcagcaagattcatttattttattgtcataaagaaggctaaatgcaagtaaaaactaaatcttatcagaaatt 10075126  T

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Target: chr3; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 278 - 422
Target Start/End: Original strand, 10365736 - 10365879
Alignment:
Q  278 ataatgatggagaataatattcttcccaattgcttcaaccaagtgtagaaccatctttccggcgtgaactcctttgacaccacttgaccaatagactttg 377  Q
    ||||||||||||||||||||| || |||| ||||||||||| | |||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||    
T  10365736 ataatgatggagaataatatttttaccaactgcttcaaccaggcgtagaaccatctttccggtgtgaactcctttgacacaacttgaccaataaactttg 10365835  T
Q  378 tatgtatcgacaatataaatgcaaccctaaaatgaagcatgaata 422  Q
    |||| |||||||||||||| |||||||||||||| ||||||||||    
T  10365836 tatgcatcgacaatataaacgcaaccctaaaatg-agcatgaata 10365879  T

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Target: chr3; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 10136861 - 10136676
Alignment:
Q  17 gcacggtccacagaaggtgacatatcatgaggtgtgttgctaatgaacaatccatataatcccaaaccaaaaatcaacataacagtaccagtaagataaa 116  Q
    ||||||||||||||||||||||| |||||||| | |||| | || |||||||||||||  | ||  ||||||||||||||||| ||||||| ||||||||    
T  10136861 gcacggtccacagaaggtgacatgtcatgaggcgcgttggtgataaacaatccatatatacgcattccaaaaatcaacataacggtaccagcaagataaa 10136762  T
Q  117 catctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatcagaaatttggac 202  Q
    |||||||||||  | |||||||||||||||||| |||| | |||| | ||||||||||||||||||| | ||||||||||||||||    
T  10136761 catctgcagcagcaagattcatttattttattgtcataaagaaggatgaatgtaagtaaaaactaaatcatatcagaaatttggac 10136676  T

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Target: chr3; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 69 - 202
Target Start/End: Original strand, 10365502 - 10365635
Alignment:
Q  69 catataatcccaaaccaaaaatcaacataacagtaccagtaagataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatg 168  Q
    ||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||| | | |||||||||| ||| ||| |||||| |||||||||||    
T  10365502 catataagcccataccaaaaatcaacataacagtaccagcaagataaacatctgcagctacaagattcatttaattttttgtcatagagaaggctaaatg 10365601  T
Q  169 taagtaaaaactaaaccttatcagaaatttggac 202  Q
    | ||||||||||||| ||||||||||||||||||    
T  10365602 tcagtaaaaactaaatcttatcagaaatttggac 10365635  T

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Target: chr3; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 35 - 202
Target Start/End: Complemental strand, 10134208 - 10134041
Alignment:
Q  35 gacatatcatgaggtgtgttgctaatgaacaatccatataatcccaaaccaaaaatcaacataacagtaccagtaagataaacatctgcagcaataggat 134  Q
    ||||| ||||||||||||||||| || ||||||||||| ||   ||  || |||||||||||||  ||||||| |||||||||||||||||||| | ||     
T  10134208 gacatgtcatgaggtgtgttgctgataaacaatccataaaagaacattccgaaaatcaacataatggtaccagcaagataaacatctgcagcaacaagac 10134109  T
Q  135 tcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatcagaaatttggac 202  Q
    ||||||||||||||| |||| | |||||||||||| ||| ||||||||| ||||||||||||||||||    
T  10134108 tcatttattttattgtcataaagaaggctaaatgtcagtcaaaactaaatcttatcagaaatttggac 10134041  T

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Target: chr3; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 278 - 381
Target Start/End: Complemental strand, 10136561 - 10136458
Alignment:
Q  278 ataatgatggagaataatattcttcccaattgcttcaaccaagtgtagaaccatctttccggcgtgaactcctttgacaccacttgaccaatagactttg 377  Q
    |||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||| |||||||||||||||||  ||||||||||||||||||    
T  10136561 ataatgatggagaataatattcttaccaattgcttcaaccaggcgtagaaccatctttccggtgtgaactcctttgacacagcttgaccaatagactttg 10136462  T
Q  378 tatg 381  Q
    ||||    
T  10136461 tatg 10136458  T

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Target: chr3; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 278 - 381
Target Start/End: Complemental strand, 10133940 - 10133837
Alignment:
Q  278 ataatgatggagaataatattcttcccaattgcttcaaccaagtgtagaaccatctttccggcgtgaactcctttgacaccacttgaccaatagactttg 377  Q
    |||||||||||||||||||||||| ||||||||||| ||||   | | |||||| ||||||| |||||||||||||||||  ||||||||||||||||||    
T  10133940 ataatgatggagaataatattcttaccaattgcttcgaccagacgcaaaaccatatttccggtgtgaactcctttgacacagcttgaccaatagactttg 10133841  T
Q  378 tatg 381  Q
    ||||    
T  10133840 tatg 10133837  T

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Target: chr3; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 112 - 198
Target Start/End: Complemental strand, 10102305 - 10102219
Alignment:
Q  112 ataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatcagaaattt 198  Q
    ||||||||||||||||  | |||||||||||||||||| |||| | |||||||||||||||||||||||||| ||||||||||||||    
T  10102305 ataaacatctgcagcagcaagattcatttattttattgtcataaagaaggctaaatgtaagtaaaaactaaagcttatcagaaattt 10102219  T

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Target: chr3; HSP #11
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 112 - 198
Target Start/End: Complemental strand, 10213228 - 10213142
Alignment:
Q  112 ataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatcagaaattt 198  Q
    ||||||||||||||||  | |||||||||||||||||| |||| | |||||||||||||||||||||||||| ||||||||||||||    
T  10213228 ataaacatctgcagcagcaagattcatttattttattgtcataaagaaggctaaatgtaagtaaaaactaaagcttatcagaaattt 10213142  T

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Target: chr3; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 285 - 381
Target Start/End: Complemental strand, 10213016 - 10212920
Alignment:
Q  285 tggagaataatattcttcccaattgcttcaaccaagtgtagaaccatctttccggcgtgaactcctttgacaccacttgaccaatagactttgtatg 381  Q
    |||| |||||||||||| ||||||||||| ||||   | |||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||    
T  10213016 tggataataatattcttaccaattgcttcgaccagaggcagaaccatctttccggagtgaactcctttgacacagcttgaccaatagactttgtatg 10212920  T

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Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 91 - 202
Target Start/End: Complemental strand, 10221353 - 10221242
Alignment:
Q  91 caacataacagtaccagtaagataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatc 190  Q
    |||||||| |||||  | ||||||||||| |||||||  | | ||||||||||||| || |||| | || ||||||||||||||||||||||| ||||||    
T  10221353 caacataagagtactggcaagataaacatatgcagcagcaagtttcatttattttactgtcataaagaaagctaaatgtaagtaaaaactaaatcttatc 10221254  T
Q  191 agaaatttggac 202  Q
    ||||||||||||    
T  10221253 agaaatttggac 10221242  T

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Target: chr3; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 285 - 381
Target Start/End: Complemental strand, 10102093 - 10101997
Alignment:
Q  285 tggagaataatattcttcccaattgcttcaaccaagtgtagaaccatctttccggcgtgaactcctttgacaccacttgaccaatagactttgtatg 381  Q
    |||| |||||||||||| |||||||| || |||    | |||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||    
T  10102093 tggataataatattcttaccaattgcgtcgacctgaggcagaaccatctttccggagtgaactcctttgacacagcttgaccaatagactttgtatg 10101997  T

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Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 10221416 - 10221351
Alignment:
Q  1 agaggaccctttaagcgcacggtccacagaaggtgacatatcatgaggtgtgttgctaatgaacaa 66  Q
    |||||| |||||||| |||||||| ||||||| ||||| |||||||||||||||| | ||||||||    
T  10221416 agaggatcctttaagggcacggtcgacagaagctgacacatcatgaggtgtgttgttgatgaacaa 10221351  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 10102377 - 10102324
Alignment:
Q  19 acggtccacagaaggtgacatatcatgaggtgtgttgctaatgaacaatccata 72  Q
    ||||||||||||||||||||| |||||||| | |||||| || |||||||||||    
T  10102377 acggtccacagaaggtgacatgtcatgaggcgcgttgctgataaacaatccata 10102324  T

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Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 10213300 - 10213247
Alignment:
Q  19 acggtccacagaaggtgacatatcatgaggtgtgttgctaatgaacaatccata 72  Q
    ||||||||||||||||||||| |||||||| | |||||| || |||||||||||    
T  10213300 acggtccacagaaggtgacatgtcatgaggcgcgttgctgataaacaatccata 10213247  T

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Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 25793747 - 25793598
Alignment:
Q  1 agaggaccctttaagcgcacggtccacagaaggtgacatatcatgaggtgtgttgctaatgaacaatccatataatcccaaaccaaaaatcaacataaca 100  Q
    |||||| |||||||| |||||||| |||| ||||  || |||||||||||||||||| ||||||||||||||||| ||||  ||||||||||||||||||    
T  25793747 agaggatcctttaagggcacggtcgacagcaggttgcacatcatgaggtgtgttgctgatgaacaatccatataagcccatgccaaaaatcaacataaca 25793648  T
Q  101 gtaccagtaagataaacatctgcagcaataggattcatttattttattga 150  Q
    ||||||| |||||||||||||||||||  | |||||||  ||||||||||    
T  25793647 gtaccagcaagataaacatctgcagcagaaagattcatacattttattga 25793598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 303 - 412
Target Start/End: Complemental strand, 25793409 - 25793300
Alignment:
Q  303 ccaattgcttcaaccaagtgtagaaccatctttccggcgtgaactcctttgacaccacttgaccaatagactttgtatgtatcgacaatataaatgcaac 402  Q
    |||||||||||||| |   | |||||||||||||| | ||||||||||||||||| ||||| |||||||||||||||||  || ||||||||||  || |    
T  25793409 ccaattgcttcaactagaagcagaaccatctttccagtgtgaactcctttgacacaacttgtccaatagactttgtatgcttcaacaatataaacacagc 25793310  T
Q  403 cctaaaatga 412  Q
    ||||||||||    
T  25793309 cctaaaatga 25793300  T

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Target: scaffold0045 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 83 - 202
Target Start/End: Complemental strand, 85873 - 85754
Alignment:
Q  83 ccaaaaatcaacataacagtaccagtaagataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaa 182  Q
    ||||||||||||||||| ||||||| ||||||||||| |||||||  | |||||||||||||||||| |||| | |||| | ||||||||||||||||||    
T  85873 ccaaaaatcaacataacggtaccagcaagataaacatttgcagcagcaagattcatttattttattgtcataaagaaggatgaatgtaagtaaaaactaa 85774  T
Q  183 accttatcagaaatttggac 202  Q
    | ||||||||||||||||||    
T  85773 atcttatcagaaatttggac 85754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 91 - 202
Target Start/End: Complemental strand, 26816711 - 26816600
Alignment:
Q  91 caacataacagtaccagtaagataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatc 190  Q
    |||||||| |||||  | ||||||||||| |||||||  | | ||||||||||||| || |||| | || ||||||||||||||||||||||| ||||||    
T  26816711 caacataagagtactggcaagataaacatatgcagcagcaagtttcatttattttactgtcataaagaaagctaaatgtaagtaaaaactaaatcttatc 26816612  T
Q  191 agaaatttggac 202  Q
    ||||||||||||    
T  26816611 agaaatttggac 26816600  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 26816774 - 26816709
Alignment:
Q  1 agaggaccctttaagcgcacggtccacagaaggtgacatatcatgaggtgtgttgctaatgaacaa 66  Q
    |||||| |||||||| |||||||| ||||||| ||||| |||||||||||||||| | ||||||||    
T  26816774 agaggatcctttaagggcacggtcgacagaagctgacacatcatgaggtgtgttgttgatgaacaa 26816709  T

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