View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3450_high_5 (Length: 364)
Name: NF3450_high_5
Description: NF3450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3450_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 346
Target Start/End: Complemental strand, 38954927 - 38954596
Alignment:
| Q |
18 |
atgatgggacaaaatggtagttttcataggatgtaaatgtaaaactttattacgttgacaatatatatcccttaaatccttaagagtatttagttatata |
117 |
Q |
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| T |
38954927 |
atgatgtgacaaaatggtagttttcatcggatgtaaatgtaaaactttattacgttgacaatatatatcccttaaatccttaacaatatttagttatata |
38954828 |
T |
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| Q |
118 |
tatgtaaatgtgtaaaataagattaagctaaggttatataacaataatttgtacgattaatagaaacaataatta---ttatgtacttaccaaacaaagg |
214 |
Q |
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| T |
38954827 |
tatgtaaatgtgtaaaataagattaagctaaggttatataactataatttgtacgattaatagaaacaataattattattatgtacttaccaaacaaagg |
38954728 |
T |
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| Q |
215 |
cctttgatgattgtatcggtgtagtactctggctgtgattcttgcatgtttagaagatgatctatcatggtatttgtacgttctttcttgctacgttgct |
314 |
Q |
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| T |
38954727 |
cctttgatgattgtatcggtgtagtactctggctgtgattcttgcatgtttagaagatgatctatcatggtatttgtacgttctttcttgctacgttgct |
38954628 |
T |
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| Q |
315 |
cttgaaggagtccactcaaaaatacatcattc |
346 |
Q |
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| T |
38954627 |
cttgaaggagtccactcaaaaatacatcattc |
38954596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 333
Target Start/End: Original strand, 38975724 - 38975846
Alignment:
| Q |
211 |
aaggcctttgatgattgtatcggtgtagtactctggctgtgattcttgcatgtttagaagatgatctatcatggtatttgtacgttctttcttgctacgt |
310 |
Q |
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| T |
38975724 |
aaggcctttgatgatttgatcagtatagtactcaggttgtgattcttgtaaacttagaagatgatctatcatagtatttgtatgctggtttttgctgcgt |
38975823 |
T |
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| Q |
311 |
tgctcttgaaggagtccactcaa |
333 |
Q |
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| T |
38975824 |
tgttcttgaatgagtcctctcaa |
38975846 |
T |
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