View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3450_low_1 (Length: 537)

Name: NF3450_low_1
Description: NF3450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3450_low_1
NF3450_low_1
[»] chr4 (5 HSPs)
chr4 (366-530)||(12210303-12210476)
chr4 (53-176)||(12210709-12210832)
chr4 (252-352)||(12210531-12210632)
chr4 (1-101)||(31689370-31689465)
chr4 (1-53)||(12206959-12207011)
[»] chr8 (5 HSPs)
chr8 (366-530)||(16102115-16102288)
chr8 (1-174)||(16101711-16101879)
chr8 (252-370)||(16101956-16102075)
chr8 (1-50)||(16113089-16113138)
chr8 (1-53)||(16105846-16105898)
[»] chr3 (5 HSPs)
chr3 (365-530)||(17618442-17618616)
chr3 (1-176)||(17618850-17619020)
chr3 (252-370)||(17618655-17618773)
chr3 (17-123)||(29032567-29032668)
chr3 (13-53)||(17615205-17615245)
[»] chr7 (4 HSPs)
chr7 (254-368)||(5997045-5997160)
chr7 (366-455)||(5996769-5996858)
chr7 (99-179)||(5997329-5997409)
chr7 (474-530)||(5996628-5996683)
[»] chr1 (5 HSPs)
chr1 (254-368)||(42031122-42031238)
chr1 (366-454)||(42030847-42030935)
chr1 (99-179)||(42031409-42031489)
chr1 (99-171)||(42027172-42027244)
chr1 (474-530)||(42030705-42030760)


Alignment Details
Target: chr4 (Bit Score: 130; Significance: 4e-67; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 366 - 530
Target Start/End: Complemental strand, 12210476 - 12210303
Alignment:
Q  366 tgggagctggtgttgaagcaattttatgctcggctgggtttggaggatttagcaaggccattgttgtttttcgtttcggctatcttattggagttttgtg 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  12210476 tgggagctggtgttgaagcaattttatgctcggctgggtttggaggatttagcaaggccattgttgtttttggtttcggctaccttattggagttttgtg 12210377  T
Q  466 gtttcgggtgtttg---------tattcggtgttccgtcgatatgcggcacctgtttatttgtattgatgatgt 530  Q
    |||| |||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12210376 gttttgggtgtttgtattgtttgtattcggtgttccgtcgatatgcggcacctgtttatttgtattgatgatgt 12210303  T

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Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 53 - 176
Target Start/End: Complemental strand, 12210832 - 12210709
Alignment:
Q  53 ttccttccatgttgtgcttacttctcataaatcttcttaatttatattcgaccttttctcttaatcttgttttcgatatctgttttactgagaaacagct 152  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||    
T  12210832 ttccttccatgttgtgcttgcttctcatgaatcttcttaatttatattcgacctcttctcttaatcatgttttcgatatctgttttactgagaaatagct 12210733  T
Q  153 aaaaacctaaatcccaaaaacaca 176  Q
    |||| |||||||||||||||||||    
T  12210732 aaaaccctaaatcccaaaaacaca 12210709  T

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Target: chr4; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 252 - 352
Target Start/End: Complemental strand, 12210632 - 12210531
Alignment:
Q  252 gtaatagtggttctacaaatggtttttt-gttgaattttgattcagttcaggtgctgcatatcaacaaagaaaattggaaagaagagctatattggttat 350  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12210632 gtaatagtggttctacaaatggtttttttgttgaattttgattcagttcaggtgctacatatcaacaaagaaaattggaaagaagagctatattggttat 12210533  T
Q  351 ta 352  Q
    ||    
T  12210532 ta 12210531  T

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Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 31689370 - 31689465
Alignment:
Q  1 tctccttcttccttctcttctctgttacggtttgctaaaaaattaccttcctttccttccatgttgtgcttacttctcataaatcttcttaatttatatt 100  Q
    ||||||||||||||||||||||| ||||||||| || ||||||||||     |||||||||||||||||||  ||||||| |||||||||||||||||||    
T  31689370 tctccttcttccttctcttctctattacggttttctcaaaaattacc-----ttccttccatgttgtgcttgattctcatgaatcttcttaatttatatt 31689464  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 12206959 - 12207011
Alignment:
Q  1 tctccttcttccttctcttctctgttacggtttgctaaaaaattaccttcctt 53  Q
    |||||||||||||| |||||| |||||||||||||| ||| ||||||||||||    
T  12206959 tctccttcttccttatcttctttgttacggtttgctcaaagattaccttcctt 12207011  T

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Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 366 - 530
Target Start/End: Original strand, 16102115 - 16102288
Alignment:
Q  366 tgggagctggtgttgaagcaattttatgctcggctgggtttggaggatttagcaaggccattgttgtttttcgtttcggctatcttattggagttttgtg 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||  ||    
T  16102115 tgggagctggtgttgaagcaattttatgctcggctgggtttggaggatttagcaaggccattgttgtttttggtttcggctaccttattggagtttaatg 16102214  T
Q  466 gtttcggg---------tgtttgtattcggtgttccgtcgatatgcggcacctgtttatttgtattgatgatgt 530  Q
    |||| |||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16102215 gtttagggtgtttgtattgtttgtattcggtgttccgtcgatatgcggcacctgtttatttgtattgatgatgt 16102288  T

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Target: chr8; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 16101711 - 16101879
Alignment:
Q  1 tctccttcttccttctcttctctgttacggtttgctaaaaaattaccttcctttccttccatgttgtgcttacttctcataaatcttcttaatttatatt 100  Q
    |||||||||||||||| ||||||||||| ||||||| ||||||||||||||     |||||||||||| || |||||||| |||||||||||||||||||    
T  16101711 tctccttcttccttctattctctgttacagtttgctcaaaaattaccttcc-----ttccatgttgtgattgcttctcatgaatcttcttaatttatatt 16101805  T
Q  101 cgaccttttctcttaatcttgttttcgatatctgttttactgagaaacagctaaaaacctaaatcccaaaaaca 174  Q
    | |||| ||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  16101806 ctacctcttctcttaatcatgttttcgatatctgttttactgagaaacaactaaaaccctaaatcccaaaaaca 16101879  T

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Target: chr8; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 252 - 370
Target Start/End: Original strand, 16101956 - 16102075
Alignment:
Q  252 gtaatagtggttctacaaatggtttt-ttgttgaattttgattcagttcaggtgctgcatatcaacaaagaaaattggaaagaagagctatattggttat 350  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||| ||||||| ||||||||||||||||| ||||||||||| |||||||||||||    
T  16101956 gtaatagtggttctacaaatggtttttttgttgaattttgatttagtttaggtgctacatatcaacaaagaaaaatggaaagaagatctatattggttat 16102055  T
Q  351 tattactgtcatggttggga 370  Q
    ||||||||||||||||||||    
T  16102056 tattactgtcatggttggga 16102075  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 16113138 - 16113089
Alignment:
Q  1 tctccttcttccttctcttctctgttacggtttgctaaaaaattaccttc 50  Q
    ||||||||||||||||||||| |||||||||||||| |||||||| ||||    
T  16113138 tctccttcttccttctcttctttgttacggtttgcttaaaaattatcttc 16113089  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 16105898 - 16105846
Alignment:
Q  1 tctccttcttccttctcttctctgttacggtttgctaaaaaattaccttcctt 53  Q
    |||||||||||||| |||||| |||||||||||||| ||| ||||||||||||    
T  16105898 tctccttcttccttatcttctttgttacggtttgctcaaagattaccttcctt 16105846  T

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Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 365 - 530
Target Start/End: Complemental strand, 17618616 - 17618442
Alignment:
Q  365 ttgggagctggtgttgaagcaattttatgctcggctgggtttggaggatttagcaaggccattgttgtttttcgtttcggctatcttattggagttttgt 464  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||    
T  17618616 ttgggagctggtcttgaagcaattttatgctcggctgggtttggaggatttcgcaaggccattgttgtttttggtttcggctaccttattggagttttgt 17618517  T
Q  465 ggtttcgggtgtttg---------tattcggtgttccgtcgatatgcggcacctgtttatttgtattgatgatgt 530  Q
    |||||| ||||||||         ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17618516 ggtttcaggtgtttgtattgtttgtattcggtgttccatcgatatgcggcacctgtttatttgtattgatgatgt 17618442  T

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Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 17619020 - 17618850
Alignment:
Q  1 tctccttcttccttctcttctctgttacggtttgctaaaaaattaccttcctttccttccatgttgtgcttacttctcataaatcttcttaatttatatt 100  Q
    |||| |||||||||||||||| ||||||| |||||| ||| ||||||||||||     ||||||||||||| |||||||| |||||||||||||||||||    
T  17619020 tctctttcttccttctcttctatgttacgttttgctcaaagattaccttcctt-----ccatgttgtgcttgcttctcatgaatcttcttaatttatatt 17618926  T
Q  101 cgaccttttctcttaatcttgttttcgatatctgttttactgagaaacagctaaaaacctaaatcccaaaaacaca 176  Q
    |||||| ||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||    
T  17618925 cgacctcttctcttaatcatgttttcgatatttgttttactgagaaacagctaaaaccctaaattccaaaaacaca 17618850  T

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Target: chr3; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 252 - 370
Target Start/End: Complemental strand, 17618773 - 17618655
Alignment:
Q  252 gtaatagtggttctacaaatggttttttgttgaattttgattcagttcaggtgctgcatatcaacaaagaaaattggaaagaagagctatattggttatt 351  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||| || |||||||||||||    
T  17618773 gtaatagtggttctacaaatggttttttgttgaatttttattcagtacaggtgctacatatcaacaaagaaaattggaaagaatagttatattggttatt 17618674  T
Q  352 attactgtcatggttggga 370  Q
    |||||||||||||||||||    
T  17618673 attactgtcatggttggga 17618655  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 29032668 - 29032567
Alignment:
Q  17 cttctctgttacggtttgctaaaaaattaccttcctttccttccatgttgtgcttacttctcataaatcttcttaatttatattcgaccttttctcttaa 116  Q
    ||||||||||||| |||||| ||| ||||||||||||     ||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||    
T  29032668 cttctctgttacgttttgctcaaagattaccttcctt-----ccatgttgtgcttgcttctcatgaatcttcttaatttatattcgacctcttctcttaa 29032574  T
Q  117 tcttgtt 123  Q
    || ||||    
T  29032573 tcatgtt 29032567  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 17615205 - 17615245
Alignment:
Q  13 ttctcttctctgttacggtttgctaaaaaattaccttcctt 53  Q
    ||||||||||||||||| |||||| ||| ||||||||||||    
T  17615205 ttctcttctctgttacgttttgctcaaagattaccttcctt 17615245  T

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Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 254 - 368
Target Start/End: Complemental strand, 5997160 - 5997045
Alignment:
Q  254 aatagtggttctacaaatggttttttgttgaattttgattcagttcaggtgctgcatatcaacaaagaaaattggaaagaagagctatattg-gttatta 352  Q
    ||||||||||||||||||| |||||||||||||||||||| | ||| |||||| |||||||||||||||||| ||||||||||||||||||| |||||||    
T  5997160 aatagtggttctacaaatgattttttgttgaattttgattaatttcgggtgctacatatcaacaaagaaaatgggaaagaagagctatattgagttatta 5997061  T
Q  353 ttactgtcatggttgg 368  Q
    ||||||||||||||||    
T  5997060 ttactgtcatggttgg 5997045  T

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Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 366 - 455
Target Start/End: Complemental strand, 5996858 - 5996769
Alignment:
Q  366 tgggagctggtgttgaagcaattttatgctcggctgggtttggaggatttagcaaggccattgttgtttttcgtttcggctatcttattg 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||| |||||||    
T  5996858 tgggagctggtgttgaagcaattttatgctcggctgggtttggaggatttaacaaggctattgttgtttttggtttcggctaccttattg 5996769  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 5997409 - 5997329
Alignment:
Q  99 ttcgaccttttctcttaatcttgttttcgatatctgttttactgagaaacagctaaaaacctaaatcccaaaaacacataa 179  Q
    |||||||| |||||| |||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  5997409 ttcgacctcttctctcaatcatgttttcgatatctgttttacagagaaacagctaaaaccctaaatcccaaaaacacataa 5997329  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 474 - 530
Target Start/End: Complemental strand, 5996683 - 5996628
Alignment:
Q  474 tgtttgtattcggtgttccgtcgatatgcggcacctgtttatttgtattgatgatgt 530  Q
    |||||||||| ||||||||||| ||||| |||||||  || ||||||||||||||||    
T  5996683 tgtttgtatttggtgttccgtctatatgaggcacct-attgtttgtattgatgatgt 5996628  T

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Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 254 - 368
Target Start/End: Complemental strand, 42031238 - 42031122
Alignment:
Q  254 aatagtggttctacaaatggtttttt-gttgaattttgattcagttcaggtgctgcatatcaacaaagaaaattggaaagaagagctatattg-gttatt 351  Q
    ||||||||||||||||||| |||||| |||||||||||||| | ||| |||||| |||||||||||||||||| | ||||||||||||||||| ||||||    
T  42031238 aatagtggttctacaaatgatttttttgttgaattttgattaatttcgggtgctacatatcaacaaagaaaatggaaaagaagagctatattgagttatt 42031139  T
Q  352 attactgtcatggttgg 368  Q
    |||||||||||||||||    
T  42031138 attactgtcatggttgg 42031122  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 366 - 454
Target Start/End: Complemental strand, 42030935 - 42030847
Alignment:
Q  366 tgggagctggtgttgaagcaattttatgctcggctgggtttggaggatttagcaaggccattgttgtttttcgtttcggctatcttatt 454  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||| ||||||    
T  42030935 tgggagctggtgttgaagaaattttatgctcggctgggtttggaggatttaacaaggctattgttgtttttggtttcggctaccttatt 42030847  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 42031489 - 42031409
Alignment:
Q  99 ttcgaccttttctcttaatcttgttttcgatatctgttttactgagaaacagctaaaaacctaaatcccaaaaacacataa 179  Q
    |||||||| |||||||| || ||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||    
T  42031489 ttcgacctcttctcttagtcatgttttcgatatctgttttatagagaaacagctaaaaccctaaatcccaaaaacacataa 42031409  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 42027172 - 42027244
Alignment:
Q  99 ttcgaccttttctcttaatcttgttttcgatatctgttttactgagaaacagctaaaaacctaaatcccaaaa 171  Q
    |||||||| |||||||| || ||||||||||||||||||||  ||||||||||||||| ||||||||||||||    
T  42027172 ttcgacctcttctcttagtcatgttttcgatatctgttttatagagaaacagctaaaaccctaaatcccaaaa 42027244  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 474 - 530
Target Start/End: Complemental strand, 42030760 - 42030705
Alignment:
Q  474 tgtttgtattcggtgttccgtcgatatgcggcacctgtttatttgtattgatgatgt 530  Q
    |||||||||| ||||||||||| |||||||||||||  || ||||||||||||||||    
T  42030760 tgtttgtatttggtgttccgtctatatgcggcacct-attgtttgtattgatgatgt 42030705  T

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