View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3450_low_12 (Length: 296)
Name: NF3450_low_12
Description: NF3450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3450_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 54985693 - 54985440
Alignment:
| Q |
1 |
catactcacagtagccgcaacatgcccaattgtatgtgccacagcaacctgcagtttaaattctc-attcagtactaaatcaatatttccgtatttcaaa |
99 |
Q |
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| T |
54985693 |
catactcacagtagccgcaacatgcccaattgtatgtgccacagcaacctgcagtttaaattctccattcagtactaaatcaatatttccgtatttcaaa |
54985594 |
T |
|
| Q |
100 |
agcaagaatcttacttgatgcaaaagtctcatattctagttttagtatagtctatgtttggctacaatttcggagaggaaaaaattaattctagaactaa |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54985593 |
agcaagaatcttacttgatgcaaaagtctcatattctagctttaatatagtctatgtttggctacaatttcggagaggaaaaaattaattctagaactaa |
54985494 |
T |
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| Q |
200 |
catagtgtggcacatttagaagataaatgtgtcccttaagcatgtggtcatggt |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54985493 |
catagtgtggcacatttagaagataaatgtgtcccttaagcatgtggtcatggt |
54985440 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 7883256 - 7883207
Alignment:
| Q |
1 |
catactcacagtagccgcaacatgcccaattgtatgtgccacagcaacct |
50 |
Q |
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|||||||||||| || ||||||||||||||||| ||||||||||| |||| |
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| T |
7883256 |
catactcacagttgcagcaacatgcccaattgtgtgtgccacagctacct |
7883207 |
T |
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