View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3450_low_15 (Length: 254)
Name: NF3450_low_15
Description: NF3450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3450_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 11397208 - 11397027
Alignment:
| Q |
1 |
cctcttctcgtctagtttcctacaattcaataaccccagatgatataacaagtaagtgccaagaggttgtttttaagacaataattaagaaattttgaag |
100 |
Q |
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| T |
11397208 |
cctcttctcgtctagtttcctacaatttaataaccccagatgatataacaagtaagtgccaagaggttgtttttaagacaataattaacaaatttggaag |
11397109 |
T |
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| Q |
101 |
ataaaataggaccacaatactgatcaattagtaatcaaattctatccaacacaacaattggtcaaaggtaggaaacaaatag |
182 |
Q |
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| T |
11397108 |
atgaaataggaccacaatactgatcaattagtaatcaaattccatccaacacaacaattggtcaaaggtaggaaacaaatag |
11397027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 10732792 - 10732957
Alignment:
| Q |
1 |
cctcttctcgtctagtttcctacaattcaataaccccagatgatataacaagtaagtgccaagaggttgtttttaagacaataattaagaaattttgaag |
100 |
Q |
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| T |
10732792 |
cctcttctcgtctagtttcctacaattcaataaccccagatgata--acaagtaagtgccaagaggttgtttttaagacaatatttaacaaattttgaac |
10732889 |
T |
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| Q |
101 |
ataaaataggaccacaatactgatcaattagtaatcaaattctatccaacacaacaattggtcaaagg |
168 |
Q |
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| T |
10732890 |
atgaaataggaccacaatattgatcaatttgtaatcaaattccatccaacacaacagttggttaaagg |
10732957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 10733859 - 10733920
Alignment:
| Q |
180 |
tagcatgcattgtccacaaggttgtctctaggactttctatcaatcaacaatgttttcttct |
241 |
Q |
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| T |
10733859 |
tagcaggcattgtccacaaggttgtctcgagaagtttctatcaatcaacgttgttttcttct |
10733920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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