View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3450_low_16 (Length: 249)
Name: NF3450_low_16
Description: NF3450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3450_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 39327759 - 39327991
Alignment:
| Q |
1 |
aaacagaaaagggaaaaagaagggagaaatctttgtttcgagctgtgtgcaccttaattttctctttctaattttaagaactaattaccacatatttata |
100 |
Q |
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| T |
39327759 |
aaacagaaaagggaaaaagaagggagaaatctttgtttcgagctgtgtgcaccttaattttctctttctaattttaagaactaattaccacatatttata |
39327858 |
T |
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| Q |
101 |
gcatgcactaacagagataaatggcataacaagattatctttgatgagcgattcatagatattgtttaactcgtcaatgtttgatgtgttgtaatcattt |
200 |
Q |
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| T |
39327859 |
gcatgcactcacagagataaatggcataacaagattatctttgatgagcgattcatagatattgtttaactcgtcaatgtttgatgtgttgtaatcattt |
39327958 |
T |
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| Q |
201 |
ttacatgttgttaacaacaggcatgctcctaat |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
39327959 |
ttacatgttgttaacaacaggcatgctcctaat |
39327991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 39419203 - 39419277
Alignment:
| Q |
135 |
ttatctttgatgagcgattcatagatattgtttaactcgtcaatgtttgatgtgttgtaatcatttttacatgtt |
209 |
Q |
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||||||||||||||| ||||||||||||||||| |||| ||||||| ||||||| ||||||||||||| ||||| |
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| T |
39419203 |
ttatctttgatgagcacttcatagatattgtttatctcgccaatgttggatgtgtcgtaatcatttttatatgtt |
39419277 |
T |
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