View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3450_low_17 (Length: 249)
Name: NF3450_low_17
Description: NF3450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3450_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 54266362 - 54266573
Alignment:
| Q |
19 |
cagagaataaa-ctgattaagcttacaaataaaaaggcatataaaacagattcagaaacttattgacagctacatcacagaattttgaagagaagacaag |
117 |
Q |
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| T |
54266362 |
cagagaataaaactgattaagcttacaaataaaaaggcatataaaacagattcagaaacttattgacagctacatcacagaattttgaagagaagacaag |
54266461 |
T |
|
| Q |
118 |
agagaaagaatttaacatagagccgattttacagacggccacaaacaaccatctttcagccggctatcacaattctgccagcacaaatttttctaacccc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54266462 |
agagaaagaatttaacatagagccgattttacagacggccacaaacaaccatctttcagccggctatcacaattctgccagcacaaatttttctaacccc |
54266561 |
T |
|
| Q |
218 |
attccttagccc |
229 |
Q |
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|||||||||||| |
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| T |
54266562 |
attccttagccc |
54266573 |
T |
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