View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3450_low_2 (Length: 524)

Name: NF3450_low_2
Description: NF3450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3450_low_2
NF3450_low_2
[»] chr3 (10 HSPs)
chr3 (19-517)||(47947061-47947553)
chr3 (238-335)||(47941275-47941371)
chr3 (35-145)||(47910166-47910276)
chr3 (19-145)||(47929107-47929233)
chr3 (396-512)||(47941019-47941135)
chr3 (264-334)||(47928708-47928778)
chr3 (39-109)||(47941544-47941614)
chr3 (257-349)||(47920583-47920675)
chr3 (20-145)||(47920772-47920900)
chr3 (394-468)||(47909616-47909690)
[»] chr6 (1 HSPs)
chr6 (41-145)||(3859662-3859766)


Alignment Details
Target: chr3 (Bit Score: 442; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 19 - 517
Target Start/End: Complemental strand, 47947553 - 47947061
Alignment:
Q  19 cgcacaagcaaacatcaacgtatggaatccaaatgttgaacaaccagaagatttcactacggctcaaatgtggcttaaggctaacaatggtgaaaatttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47947553 cgcacaagcaaacatcaacgtatggaatccaaatgttgaacaaccagaagatttcactacggctcaaatgtggcttaaggctaacaatggtgaaaatttt 47947454  T
Q  119 gcaagcgttgaagctggctggatggttcgtacgtgatcgccctacttcattttcaaaattaactatgcacacctactttactagttgtttcttagttata 218  Q
    ||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  47947453 gcaagcgttgaagctggctggatggttcgt----gatcgccctacttcattttcaaaattaactatgcacgcctactttactagttgtttcttagttata 47947358  T
Q  219 atattatatacatgattaaacatgcctaatcctctttctatatgttatggtttaggttaatccaaagttgtatggtgaccacaactcccgattgtttgcc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47947357 atattatatacatgattaaacatgcctaatcctctttctatatgttatggtttaggttaatccaaagttgtatggtgaccacaactcccgattgtttgcc 47947258  T
Q  319 gcttggactgtaagttcctatttattgaaagctataatcttatagtagttgnnnnnnnataaccacaaatccatatattgattgcggtgcagcaagattc 418  Q
    ||||||||| ||||||||||||||||||||||  |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  47947257 gcttggactataagttcctatttattgaaagc--taatcttatagtagttgtttttttataaccacaaatccatatattgattgcggtgcagcaagattc 47947160  T
Q  419 ataccatacaacaggttgcttcgatcttacttgccaaggatttgtgcaaatagcctcagagatagcacttggttctaccgtaggaccttattcatctca 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47947159 ataccatacaacaggttgcttcgatcttacttgccaaggatttgtgcaaatagcctcagagatagcacttggttctaccgtaggaccttattcatctca 47947061  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 238 - 335
Target Start/End: Complemental strand, 47941371 - 47941275
Alignment:
Q  238 acatgcctaatcctctttctatatgttatggtttaggttaatccaaagttgtatggtgaccacaactcccgattgtttgccgcttggactgtaagttc 335  Q
    ||||||||||| |||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  47941371 acatgcctaatgctctctctatatgttatggtt-aggttaatccgaagttgtatggtgaccacaactcccgattgtttaccgcttggactgtaagttc 47941275  T

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Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 35 - 145
Target Start/End: Complemental strand, 47910276 - 47910166
Alignment:
Q  35 aacgtatggaatccaaatgttgaacaaccagaagatttcactacggctcaaatgtggcttaaggctaacaatggtgaaaattttgcaagcgttgaagctg 134  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||| |||||| || ||||| | ||| |||||||| |    
T  47910276 aacgtatggaatccaaaggttgaaaaaccagaagatttcactactgctcaaatgtggcttaaggctaccaatggagataatttagaaagtgttgaagcag 47910177  T
Q  135 gctggatggtt 145  Q
    | |||| ||||    
T  47910176 gatggacggtt 47910166  T

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Target: chr3; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 47929233 - 47929107
Alignment:
Q  19 cgcacaagcaaacatcaacgtatggaatccaaatgttgaacaaccagaagatttcactacggctcaaatgtggcttaaggctaacaatggtgaaaatttt 118  Q
    |||||||||||| |||||||| ||||||||||| |||||  ||||||||||||||||||| ||||||||||||||||||||| | |||||  | |||||     
T  47929233 cgcacaagcaaatatcaacgtttggaatccaaaggttgacaaaccagaagatttcactaccgctcaaatgtggcttaaggctgataatggaaataatttc 47929134  T
Q  119 gcaagcgttgaagctggctggatggtt 145  Q
    | |||| ||||||| ||||||| ||||    
T  47929133 gaaagcattgaagcaggctggacggtt 47929107  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 396 - 512
Target Start/End: Complemental strand, 47941135 - 47941019
Alignment:
Q  396 ttgattgcggtgcagcaagattcataccatacaacaggttgcttcgatcttacttgccaaggatttgtgcaaatagcctcagagatagcacttggttcta 495  Q
    ||||||||||||||| |||||||||||||  ||||||||||||| |||||||| ||    || ||||||||||||||| ||||| | |||||||||||||    
T  47941135 ttgattgcggtgcagaaagattcataccagtcaacaggttgctttgatcttacctgtagtggttttgtgcaaatagccacagagtttgcacttggttcta 47941036  T
Q  496 ccgtaggaccttattca 512  Q
    | || | ||||||||||    
T  47941035 cagtggaaccttattca 47941019  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 264 - 334
Target Start/End: Complemental strand, 47928778 - 47928708
Alignment:
Q  264 tatggtttaggttaatccaaagttgtatggtgaccacaactcccgattgtttgccgcttggactgtaagtt 334  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||  ||  ||||||||||||||    
T  47928778 tatggtttaggttaatccaaagttgtatggtgaccacaacacccgcttgttcacctattggactgtaagtt 47928708  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 47941614 - 47941544
Alignment:
Q  39 tatggaatccaaatgttgaacaaccagaagatttcactacggctcaaatgtggcttaaggctaacaatggt 109  Q
    ||||||||||||| ||||||| |||||||||||||||||| |||||||| ||||||||||||  |||||||    
T  47941614 tatggaatccaaaggttgaacgaccagaagatttcactactgctcaaatatggcttaaggctgccaatggt 47941544  T

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Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 257 - 349
Target Start/End: Complemental strand, 47920675 - 47920583
Alignment:
Q  257 tatatgttatggtttaggttaatccaaagttgtatggtgaccacaactcccgattgtttgccgcttggactgtaagttcctatttattgaaag 349  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||  |||| || || | |  |||||||||||||||  ||||||||||||    
T  47920675 tatatgttatggttcaggttaatccaaagttgtatggtgaccataatacccgtttcttcgtctattggactgtaagttctcatttattgaaag 47920583  T

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Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 47920900 - 47920772
Alignment:
Q  20 gcacaagcaaacatcaacgtatggaatccaaatgttgaacaaccagaagatttcactacggctcaaatgtggcttaaggctaacaatgg---tgaaaatt 116  Q
    |||||||| || || || || ||||||||||| |||||| ||||||||||||| ||||| |||||||| ||||||||||||  ||||||   ||| ||||    
T  47920900 gcacaagcgaatattaatgtgtggaatccaaaagttgaaaaaccagaagattttactactgctcaaatatggcttaaggctgccaatggtcctgataatt 47920801  T
Q  117 ttgcaagcgttgaagctggctggatggtt 145  Q
    ||| |||| | ||||| ||||||| ||||    
T  47920800 ttgaaagcatcgaagcaggctggacggtt 47920772  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 468
Target Start/End: Complemental strand, 47909690 - 47909616
Alignment:
Q  394 tattgattgcggtgcagcaagattcataccatacaacaggttgcttcgatcttacttgccaaggatttgtgcaaa 468  Q
    ||||||||| ||||||| ||||| ||||| |  ||||||||||||| |||||||||||| | || ||||||||||    
T  47909690 tattgattgtggtgcagaaagatacatacaagtcaacaggttgctttgatcttacttgcaagggttttgtgcaaa 47909616  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 145
Target Start/End: Original strand, 3859662 - 3859766
Alignment:
Q  41 tggaatccaaatgttgaacaaccagaagatttcactacggctcaaatgtggcttaaggctaacaatggtgaaaattttgcaagcgttgaagctggctgga 140  Q
    ||||||||||| ||||| | |||||| |||| ||| || |||||||| ||||| ||||||   |||||| |  | |||| |||| ||||||| |||||||    
T  3859662 tggaatccaaaagttgacctaccagatgattccaccacagctcaaatttggctgaaggctggaaatggtaatgagtttgaaagcattgaagcaggctgga 3859761  T
Q  141 tggtt 145  Q
    |||||    
T  3859762 tggtt 3859766  T

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