View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3450_low_7 (Length: 353)

Name: NF3450_low_7
Description: NF3450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3450_low_7
NF3450_low_7
[»] chr5 (1 HSPs)
chr5 (45-353)||(13715083-13715391)


Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 45 - 353
Target Start/End: Complemental strand, 13715391 - 13715083
Alignment:
Q  45 attatttgggttgaacaaaacaaacaacgcttttccaatgagaacaattccatgcaaagcctttttcacaagcttatttatgaagttcatcttagttgca 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13715391 attatttgggttgaacaaaacagacaacgcttttccaatgagaacaattccatgcaaagcctttttcacaagcttatttatgaagttcatcttagctgca 13715292  T
Q  145 atcttattaaaggtcgtggttcatcttc--tatggtagatttttgtgttacccaactgttcaaaacctcttgcagtgcgtctattcctcactcgtttttt 242  Q
    ||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13715291 atcttattaaaggtcgtggttcatcttctatatggtagacttttgtgttacccaactgttcaaaacctcttgcagtgcgtctattccttactcgtttttt 13715192  T
Q  243 gaagttgtttggccccctccttgcccggttgggtcaagtttaacctggatggatctatggtggctaannnnnnnaagtttgccactattggaattgcttg 342  Q
    |||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||| |||        ||| ||| |||||||||||||||||    
T  13715191 gaagttgtttggtcccctccttgcctggttgggtcaagtttaatctggatggatctatggtgggtaacccccc--agtctgctactattggaattgcttg 13715094  T
Q  343 tagagatagta 353  Q
    |||||||||||    
T  13715093 tagagatagta 13715083  T

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