View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3450_low_8 (Length: 341)
Name: NF3450_low_8
Description: NF3450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3450_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 7 - 323
Target Start/End: Original strand, 41249399 - 41249708
Alignment:
| Q |
7 |
gaaatgatacaggaacacaaacaaacttgttattgttagaccaaattaaatatatcactataaactctaaggcagactcgttttgctggtcctctcatat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41249399 |
gaaatgatacaggaacacaaacaaacttgttattgttagaccaaat-----atatcactataaactctaaggcagactcgttttgctggtcctctcatat |
41249493 |
T |
|
| Q |
107 |
ttctgatcgtgatgtaaaaatatacagaatagatgctccccaacctctgttcacaacgtggttgctaatcagtacattacatggatatcttgcttggata |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41249494 |
ttctgatcgtgatgtaaaaatatacagaatagatgctccccaacctctgttcacaacgtggtttctaatcagtacattacatggatatcttgcttggata |
41249593 |
T |
|
| Q |
207 |
taattggtacttgcaacgtggttgtattccttttcttgtatatatgtacctatacactgtaaatttgctctgttctctatcttttgatgaaataatggac |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41249594 |
taattggtacttgcaacgtggttgtattccttttcttgtatatatgtacc--tacactgtaaatttgctctgttctctatcttttgatgaaataatggac |
41249691 |
T |
|
| Q |
307 |
ggtctattactcagtaa |
323 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
41249692 |
ggtctattactcagtaa |
41249708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University