View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3450_low_9 (Length: 340)

Name: NF3450_low_9
Description: NF3450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3450_low_9
NF3450_low_9
[»] chr6 (3 HSPs)
chr6 (265-329)||(31036958-31037022)
chr6 (31-89)||(31037093-31037151)
chr6 (166-236)||(31074219-31074289)


Alignment Details
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 265 - 329
Target Start/End: Complemental strand, 31037022 - 31036958
Alignment:
Q  265 aaggcaccacacaagctttaagaaacttgaccaatccttaatgtcacataatccaactttgtctc 329  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  31037022 aaggtaccacacaagctttaagaaacttgaccaaaccttaatgtcaaataatccaactttgtctc 31036958  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 31037151 - 31037093
Alignment:
Q  31 gtatagttatctttaagaaggaagaaaatagagctgagtgagaatgttcaaaaaggaat 89  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31037151 gtattgttatctttaagaaggaagaaaatagagctgagagagaatgttcaaaaaggaat 31037093  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 31074289 - 31074219
Alignment:
Q  166 tgatgtatgctcaaaagaaacttgattcaatttcaatactagtgctcgaaatacttcggttgtctaatgtt 236  Q
    |||||| |||||||||||||||| ||| ||||||||||| | ||||| ||||| |||| || |||||||||    
T  31074289 tgatgtgtgctcaaaagaaacttaatttaatttcaataccaatgctcaaaataattcgattctctaatgtt 31074219  T

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