View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3451_high_4 (Length: 312)
Name: NF3451_high_4
Description: NF3451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3451_high_4 |
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| [»] scaffold0019 (1 HSPs) |
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| [»] scaffold0941 (1 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 73 - 304
Target Start/End: Complemental strand, 140600 - 140369
Alignment:
| Q |
73 |
ctacgccttctaacctttactctaccagatcaaaggctgcacaccccaaaccttttagatgaagatcctttattggaacctaagaggcttagccaatcaa |
172 |
Q |
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| T |
140600 |
ctacgccttctaacctttactctaccagatcaaaggctgcacaccccaaaccttttagatgaagatcctttattggaacctaagaggcttagccaatcaa |
140501 |
T |
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| Q |
173 |
cctacaagattggcactcaaaaacctaatacaaaataacaaacctgatataattctcattgcagagccttggatgagatttgaagacttacctaaaaatt |
272 |
Q |
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| T |
140500 |
cctacaagattggcactcaaaaacctaatacaaaataacgaacctgatataattctcattgcagagccttggatgagatttgaagacttacctaaaaatt |
140401 |
T |
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| Q |
273 |
ggttcctcatacaaaattacaaaccctttgct |
304 |
Q |
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| T |
140400 |
ggttcctcagacaaaattacaaaccctttgct |
140369 |
T |
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Target: scaffold0941 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0941
Description:
Target: scaffold0941; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 1536 - 1584
Alignment:
| Q |
117 |
cccaaaccttttagatgaagatcctttattggaacctaagaggcttagc |
165 |
Q |
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| T |
1536 |
cccaagccttttagatgaagtgcctttattggaacttaagaggtttagc |
1584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 21004302 - 21004338
Alignment:
| Q |
177 |
caagattggcactcaaaaacctaatacaaaataacaa |
213 |
Q |
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||||||||||||||||||||||||| | ||||||||| |
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| T |
21004302 |
caagattggcactcaaaaacctaattctaaataacaa |
21004338 |
T |
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