View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3451_high_7 (Length: 241)
Name: NF3451_high_7
Description: NF3451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3451_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 10378566 - 10378791
Alignment:
| Q |
1 |
aaaggatggaaatgcctccatgcgtacacttatgccacatttcaaagagaaaatgaaactaacgaagggttccggaaagcctgcaaagcactctgggagt |
100 |
Q |
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| T |
10378566 |
aaaggatggaaatgcctccatgcgtacacttatgccacatttcaaagagaaaatgaaactaacgaagggttccggaaagcctgcaaagcactctgggagt |
10378665 |
T |
|
| Q |
101 |
ccctctccaccaaaagatgacgcagatggtgttgaatggcaaattccagaaccaacacaaagccaaataactcagactcaaaaactgatttttgacccaa |
200 |
Q |
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| T |
10378666 |
ccctctccaccaaaagatgacgcagatggtgttgaatggcaaattccagaaccaacacaaagccaaataactcagactcaaaaactgatttttgacccaa |
10378765 |
T |
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| Q |
201 |
attgtaagaaaaacaacccaaaaaag |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
10378766 |
attgtaagaaaaacaacccaaaaaag |
10378791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 40 - 225
Target Start/End: Original strand, 31329213 - 31329399
Alignment:
| Q |
40 |
tttcaaagagaaaatgaaactaacgaagggttccggaaagcctgcaaagcactctgggagtccctctccaccaaaagatgacgcagatggtgttgaatgg |
139 |
Q |
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|||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| |||||| ||| ||||| | ||||| |
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| T |
31329213 |
tttcgaagagaaaatggaactaacgaagggttcccgaaagcctgcaaagcactccaggagtccc-ctccaccctaagatgccgccaatggtacttaatgg |
31329311 |
T |
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| Q |
140 |
caaattccagaaccaacacaaagccaaataactcaga---ctcaaaaactgatttttgacccaaattgtaagaaaaacaacccaaaaaa |
225 |
Q |
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| T |
31329312 |
aaaattccagagccaacacaaatccaaataact-agacctctcaaaaaccgaattttgacccaagttgcaagaaaaacaacccaaaaaa |
31329399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 40 - 225
Target Start/End: Original strand, 31335934 - 31336120
Alignment:
| Q |
40 |
tttcaaagagaaaatgaaactaacgaagggttccggaaagcctgcaaagcactctgggagtccctctccaccaaaagatgacgcagatggtgttgaatgg |
139 |
Q |
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|||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| |||||| ||| ||||| | ||||| |
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| T |
31335934 |
tttcgaagagaaaatggaactaacgaagggttcccgaaagcctgcaaagcactccaggagtccc-ctccaccctaagatgccgccaatggtacttaatgg |
31336032 |
T |
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| Q |
140 |
caaattccagaaccaacacaaagccaaataactcaga---ctcaaaaactgatttttgacccaaattgtaagaaaaacaacccaaaaaa |
225 |
Q |
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|||||||||| |||||||||| |||||||||| ||| ||||||||| || ||||||||||| ||| |||||||||||||||||||| |
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| T |
31336033 |
aaaattccagagccaacacaaatccaaataact-agacctctcaaaaaccgaattttgacccaagttgcaagaaaaacaacccaaaaaa |
31336120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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