View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3451_low_2 (Length: 579)
Name: NF3451_low_2
Description: NF3451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3451_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 472; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 13 - 560
Target Start/End: Original strand, 8695495 - 8696042
Alignment:
| Q |
13 |
aatatgcaacttttgtgatatacaaccatgctctttttagaatgtgtcacctcacctagatcctctattaatgtggccttactggattaccactcataac |
112 |
Q |
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| T |
8695495 |
aatatgcaacttttatgatatacaaccatgctctttttagaatgtgtcacctcacctagatcctctattaatgtggccttactagattaccactcataac |
8695594 |
T |
|
| Q |
113 |
cacctaaaaccccgctaccaaacacacgatcttcaaattatttaaccattaccaaccaacgaaatactcaacaacaaaatatatgtagcataaatattac |
212 |
Q |
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| T |
8695595 |
cacctaaaaccccgctaccaaacacacggtcttcaaattatttaaccattaccaaccaacgaaatactcaacaacaaaatataggtagcataaatattac |
8695694 |
T |
|
| Q |
213 |
ttttaacatagatagtaatggagttaatcttacattcatacatcaatattgcacttaataaataacgatgcaaaaccacccaaagaaaaaaccatgtatc |
312 |
Q |
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| T |
8695695 |
tgttaacatagatagtaatggagttaatcttacattcatacatcaatattgcacttaataaataacgttgcaaaaccacccaaagaaaaaaccatgtatc |
8695794 |
T |
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| Q |
313 |
atatacatggacaaacaaagggtgacaaaaagtatgattaaagattttcatggcttcttggaagttctagctgcttcttgctgatacctagtagcataac |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
8695795 |
atatacatggacaaacaaagggtgacaaaaagtatgattaaagattttcatggcttcttggaagttctagctgcttcttgtcgataccttgtagcataac |
8695894 |
T |
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| Q |
413 |
tatgaaacaaagcgagtgcgttactggtaacttctgcaacattcttcgccttaatcttaatcgtcgcaactcttttgctcatcctatgaccagggaatga |
512 |
Q |
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| T |
8695895 |
tttgaaacaaagcaagtgcgttactagtaacttctgcaacattcttcgccttcaccttaatcgtcgcaaccctcttgctcattctatgaccagggaacga |
8695994 |
T |
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| Q |
513 |
ttgtacacaactactagcgtcggttaaggcagtgctaacccatgtctc |
560 |
Q |
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| T |
8695995 |
ttgcacacaactactagcgtcggttaaggcagtgctaacccatgtctc |
8696042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 270 - 560
Target Start/End: Complemental strand, 8693520 - 8693224
Alignment:
| Q |
270 |
ataaataacgatgcaaaaccacccaaagaaaaaaccatgtatcatatacatggacaaacaaagggtgacaaaaa---gtatgatt-aaagattttcatgg |
365 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||| ||||||||| |
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| T |
8693520 |
ataaataacgatgtaaaaccacccaaagaaaaaac-atgtatcatatacatgaacaaacaaggggtgacaaaataaggtatgatttaaagtttttcatgg |
8693422 |
T |
|
| Q |
366 |
cttcttggaagttctagctg---cttcttgctgatacctagtagcataactatgaaacaaagcgagtgcgttactggtaacttctgcaacattcttcgcc |
462 |
Q |
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| T |
8693421 |
cttcttcgaagttctagccgtggctgcttgtcgataccttgtagcataactttgaaacaaagcaagtgcattactagttacttctgcaacattcttcgcc |
8693322 |
T |
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| Q |
463 |
ttaatcttaatcgtcgcaactcttttgctcatcctatgaccagggaatgattgtacacaactactagcgtcggttaaggcagtgctaacccatgtctc |
560 |
Q |
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| T |
8693321 |
ttaaccttaatcgtcgcaacactattgctcattctatgaccagggaacgattgcacacaactactagcatcggttaaggcagtgctaacccatgtctc |
8693224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 271 - 560
Target Start/End: Original strand, 8687182 - 8687473
Alignment:
| Q |
271 |
taaataacgatgcaaaaccacccaaagaaaaaaccatgtatcatatacatggacaaacaaagggtgacaaaaa---gtatgatta-aagattttcatggc |
366 |
Q |
| |
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|||||||| ||| ||||||||||||||||||||| |||| | |||||||||||||||||| |||||| |||| |||||||| ||| |||||||||| |
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| T |
8687182 |
taaataactatgtaaaaccacccaaagaaaaaac-atgtgt-atatacatggacaaacaaggggtgataaaataaggtatgatttcaagtttttcatggc |
8687279 |
T |
|
| Q |
367 |
ttcttggaagttctagctgcttcttgctgatacctagtagcataactatgaaacaaagcgagtgcgttactggtaacttctgcaacattcttcgccttaa |
466 |
Q |
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|||||| |||||||| ||| |||| ||||||||||||||||||| ||||||||||| ||||| ||||| || ||||||||||||||||||||||| | |
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| T |
8687280 |
ttcttgacggttctagccgctgcttgtcgatacctagtagcataactttgaaacaaagcaagtgcattactagttacttctgcaacattcttcgccttca |
8687379 |
T |
|
| Q |
467 |
tcttaatcgtcgcaactcttttgctcatcctatgaccagggaatgattgtacacaactactagcgtcggttaaggcagtgctaacccatgtctc |
560 |
Q |
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| T |
8687380 |
ccttaatcgtcgcaactcttttgctcattctatgaccagggaacgattgcacacaactactagcgtcggttaaggcagtgctaacccatgtctc |
8687473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 215 - 560
Target Start/End: Complemental strand, 8675349 - 8674993
Alignment:
| Q |
215 |
ttaacatagatagtaatggagttaatcttacattcata--catcaatattgcacttaataaataacgatgcaaaaccacccaaagaaaaaaccatgtat- |
311 |
Q |
| |
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|||||||| ||| ||||| |||||||| |||||||||| |||||||||| ||| ||||| ||| ||| |||||||||| |||||||||| |||||| |
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| T |
8675349 |
ttaacataaataataatgaagttaatcatacattcatatacatcaatattaaactagataaagaactatgtaaaaccacccgaagaaaaaac-atgtata |
8675251 |
T |
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| Q |
312 |
-catatacatggacaaacaaagggtgacaaaa--agt-atgatt--aaagattttcatggcttcttggaagttctagctg---cttcttgctgataccta |
402 |
Q |
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||||||||||||||||||| |||||| |||| ||| |||||| |||| |||||||||||||||| ||||||||| | || |||| ||||||| |
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| T |
8675250 |
tcatatacatggacaaacaaggggtgataaaataagttatgatttaaaagtttttcatggcttcttgacagttctagccgtggctgcttgtcgatacctt |
8675151 |
T |
|
| Q |
403 |
gtagcataactatgaaacaaagcgagtgcgttactggtaacttctgcaacattcttcgccttaatcttaatcgtcgcaactcttttgctcatcctatgac |
502 |
Q |
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||||||||||| ||||||||||| ||||| ||||| || ||||||||||||||||||||||||| ||||||||||||||| || |||||||| ||||||| |
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| T |
8675150 |
gtagcataactttgaaacaaagcaagtgcattactagttacttctgcaacattcttcgccttaaccttaatcgtcgcaaccctcttgctcattctatgac |
8675051 |
T |
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| Q |
503 |
cagggaatgattgtacacaactactagcgtcggttaaggcagtgctaacccatgtctc |
560 |
Q |
| |
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||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8675050 |
cagggaacgattgcacacaactactagcgtcggttaaggcagtgctaacccatgtctc |
8674993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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