View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3451_low_3 (Length: 392)
Name: NF3451_low_3
Description: NF3451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3451_low_3 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0191 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 52 - 392
Target Start/End: Original strand, 37575691 - 37576031
Alignment:
| Q |
52 |
gcaaacaaatatttgacatagccttgttattattcttatacagcgagttcgatgttgtcgcatttgttgtgcatgtgggaaaggtttatacgtcaagtca |
151 |
Q |
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| T |
37575691 |
gcaaacaaatatttgacatagccttgttattattcttatacagcgagttcgatgttgtcgcatttgttgtgcatgtgggaaaggtttatacgtcaagtca |
37575790 |
T |
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| Q |
152 |
gcaaaagaagcaatgggtttttgtgactgatggatccatcatgaatggtttacagtcacaacagtttactgacacattgcttgccatttgcttttgctcc |
251 |
Q |
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| T |
37575791 |
gcaaaagaagcaatgggtttttgtgactgatggatccatcatgaatggtttacagtcacaaaaggttaccgacacattgcttgccatttgcttttgctcc |
37575890 |
T |
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| Q |
252 |
ccgttgtttgatcatgattcatttccaccgatcaaccataaccttgccggatctacggtaattacattgttctatgctttttgttactgctattcttaac |
351 |
Q |
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| T |
37575891 |
ccattgtttgatcatgattcatttccaccgatcaaccataaccttgccggatctacggtaattacattgttctatgctttttgttactgctattcttaac |
37575990 |
T |
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| Q |
352 |
tatccgttatactttttgttgcttgccatttgcttttgctc |
392 |
Q |
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| T |
37575991 |
tatccgttatactttttgttgcttgccatttgcttttgctc |
37576031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 37576009 - 37576053
Alignment:
| Q |
228 |
ttgcttgccatttgcttttgctccccgttgtttgatcatgattca |
272 |
Q |
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| T |
37576009 |
ttgcttgccatttgcttttgctccctattgattgatcatgattca |
37576053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 111 - 339
Target Start/End: Original strand, 10438773 - 10439001
Alignment:
| Q |
111 |
gcatttgttgtgcatgtgggaaaggtttatacgtcaagtcagcaaaagaagcaatgggtttttgtgactgatggatccatcatgaatggtttacagtcac |
210 |
Q |
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| T |
10438773 |
gcatttgttgtgcatgtcggaaaggcttatacatcaggtcagcaaaagaagcaatgggtttttgtgactgatggatcgatcatgaaaggtttacaatcag |
10438872 |
T |
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| Q |
211 |
aacagtttactgacacattgcttgccatttgcttttgctccccgttgtttgatcatgattcatttccaccgatcaaccataaccttgccggatctacggt |
310 |
Q |
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| T |
10438873 |
agaagtttacggacacattgcttgctattttcttttgctccccattgattgatcatgattcatttccaccaatcaaccataaccttgctggatctacggt |
10438972 |
T |
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| Q |
311 |
aattacattgttctatgctttttgttact |
339 |
Q |
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| T |
10438973 |
aattacattgttctataccttttgttact |
10439001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 78 - 117
Target Start/End: Complemental strand, 23376 - 23337
Alignment:
| Q |
78 |
ttattattcttatacagcgagttcgatgttgtcgcatttg |
117 |
Q |
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| T |
23376 |
ttattattcttatacagcgagttcgatattgttgcatttg |
23337 |
T |
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