View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3455_high_13 (Length: 379)

Name: NF3455_high_13
Description: NF3455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3455_high_13
NF3455_high_13
[»] chr1 (2 HSPs)
chr1 (1-235)||(3789133-3789387)
chr1 (194-235)||(3788434-3788475)
[»] chr3 (2 HSPs)
chr3 (1-234)||(50305620-50305873)
chr3 (194-235)||(50306531-50306572)
[»] chr2 (2 HSPs)
chr2 (1-234)||(26021008-26021261)
chr2 (194-234)||(26021919-26021959)
[»] chr8 (2 HSPs)
chr8 (82-234)||(1487577-1487726)
chr8 (39-80)||(1487749-1487790)
[»] chr7 (1 HSPs)
chr7 (319-363)||(33987417-33987461)


Alignment Details
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 3789133 - 3789387
Alignment:
Q  1 aaaccgtcaccaccgcaggaaccggtaccggcaccggttagcttgcaggtcaaagaccatggaaagaaagcataagggaggaga---------------- 84  Q
    |||||||||||| ||| |||||||||| |||| ||||| |||||||||||| ||||||||||||||||||||| || |||||||                    
T  3789133 aaaccgtcaccatcgccggaaccggtatcggcgccggtgagcttgcaggtcgaagaccatggaaagaaagcatgagagaggagattgtagcggagagagg 3789232  T
Q  85 -----agcagtgggacctagctggaggaagattgtataaaaaatatattgtgttgagaatgtatgataataatatatactatatttaatctaatggttaa 179  Q
         |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||| ||||  |||||||||||||| |||    
T  3789233 gaagaagcagtgggacctagctggaggaagattgtatgaaaaatatattgtgttgagagtgtatgataatagtatgtacttgatttaatctaatggctaa 3789332  T
Q  180 tatcaacnnnnnnnatggtgggaaactcttaccccttcctaccttaaatgccaccc 235  Q
     ||||||       ||||| |||||||||| |||||||||| | ||||||||||||    
T  3789333 aatcaac-tttcctatggtaggaaactctttccccttcctatcctaaatgccaccc 3789387  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 3788475 - 3788434
Alignment:
Q  194 atggtgggaaactcttaccccttcctaccttaaatgccaccc 235  Q
    |||||||||||||||| |||||||| ||| ||||||||||||    
T  3788475 atggtgggaaactctttccccttcccaccctaaatgccaccc 3788434  T

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Target: chr3 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 50305873 - 50305620
Alignment:
Q  1 aaaccgtcaccaccgcaggaaccggtaccggcaccggttagcttgcaggtcaaagaccatggaaagaaagcataagggaggaga---------------- 84  Q
    |||||||||||| ||| |||||||||| |||| ||||| |||||||||||| ||||||||||||||||||||| || |||||||                    
T  50305873 aaaccgtcaccatcgccggaaccggtatcggcgccggtgagcttgcaggtcgaagaccatggaaagaaagcatgagagaggagattgtagcggagagagg 50305774  T
Q  85 -----agcagtgggacctagctggaggaagattgtataaaaaatatattgtgttgagaatgtatgataataatatatactatatttaatctaatggttaa 179  Q
         |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||| ||||  |||||||||||||| |||    
T  50305773 gaagaagcagtgggacctagctggaggaagattgtatgaaaaatatattgtgttgagagtgtatgataatagtatgtacttgatttaatctaatggctaa 50305674  T
Q  180 tatcaacnnnnnnnatggtgggaaactcttaccccttcctaccttaaatgccacc 234  Q
     ||||||       ||||| |||||||||| |||||||||| | |||||||||||    
T  50305673 aatcaac-tttcctatggtaggaaactctttccccttcctatcctaaatgccacc 50305620  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 50306531 - 50306572
Alignment:
Q  194 atggtgggaaactcttaccccttcctaccttaaatgccaccc 235  Q
    |||||||||||||||| |||||||| ||| ||||||||||||    
T  50306531 atggtgggaaactctttccccttcccaccctaaatgccaccc 50306572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 26021261 - 26021008
Alignment:
Q  1 aaaccgtcaccaccgcaggaaccggtaccggcaccggttagcttgcaggtcaaagaccatggaaagaaagcataagggaggaga---------------- 84  Q
    |||||||||||| ||| |||||||||| |||| ||||| |||||||||||| ||||||||||||||||||||| || |||||||                    
T  26021261 aaaccgtcaccatcgccggaaccggtatcggcgccggtgagcttgcaggtcgaagaccatggaaagaaagcatgagagaggagattgtagcggagagagg 26021162  T
Q  85 -----agcagtgggacctagctggaggaagattgtataaaaaatatattgtgttgagaatgtatgataataatatatactatatttaatctaatggttaa 179  Q
         |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||| ||||  |||||||||||||| |||    
T  26021161 gaagaagcagtgggacctagctggaggaagattgtatgaaaaatatattgtgttgagagtgtatgataatagtatgtacttgatttaatctaatggctaa 26021062  T
Q  180 tatcaacnnnnnnnatggtgggaaactcttaccccttcctaccttaaatgccacc 234  Q
     ||||||       ||||| |||||||||| |||||||||| | |||||||||||    
T  26021061 aatcaac-tttcctatggtaggaaactctttccccttcctatcctaaatgccacc 26021008  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 26021919 - 26021959
Alignment:
Q  194 atggtgggaaactcttaccccttcctaccttaaatgccacc 234  Q
    |||||||||||||||| |||||||| ||| |||||||||||    
T  26021919 atggtgggaaactctttccccttcccaccctaaatgccacc 26021959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 82 - 234
Target Start/End: Complemental strand, 1487726 - 1487577
Alignment:
Q  82 agaagcagtgggacctagctggaggaagattgtataaaaaatatattgtgttgagaatgtatgataataatatatactatatttaatctaatggttaata 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||| ||| ||||  ||||||| |||||||||| |    
T  1487726 agaagcagtgggacctagctggaggaagattgtataaaaaatata--gtgttgagagtgtatgataatagtatgtacttgatttaatttaatggttaaaa 1487629  T
Q  182 tcaacnnnnnnnatggtgggaaactcttaccccttcctaccttaaatgccacc 234  Q
    |||||       ||| | |||||||||| ||||||||||||||||||||||||    
T  1487628 tcaac-tttcctatgataggaaactctttccccttcctaccttaaatgccacc 1487577  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 1487790 - 1487749
Alignment:
Q  39 tagcttgcaggtcaaagaccatggaaagaaagcataagggag 80  Q
    ||||||||||||| ||||||||||||||||||||| ||||||    
T  1487790 tagcttgcaggtcgaagaccatggaaagaaagcatgagggag 1487749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 319 - 363
Target Start/End: Original strand, 33987417 - 33987461
Alignment:
Q  319 attggaataagaataacaaccacttgtgttgcatgatgggaattt 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  33987417 attggaataagaataacaaccacttgtgttgcatgatgggaattt 33987461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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