View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3455_high_14 (Length: 379)
Name: NF3455_high_14
Description: NF3455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3455_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 41823353 - 41823162
Alignment:
| Q |
19 |
atagcttatgttgaatattgtgtttctggggagtatccagctgaagtagttcattttgatgtcccttcattcccaaaatatgctagggttgttgaaaagg |
118 |
Q |
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| T |
41823353 |
atagcttatgttgaatattgtgtttctggggagtatccagctgaagtagttcattttgatgtcccttcattcccaaaatatgctagggttgttgaaaagg |
41823254 |
T |
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| Q |
119 |
ttgttgatgctcttattcttatatcaattaatttgcaaaaatagaatatgcttaatttactatttgatgtttattgttatgatcaacgagtc |
210 |
Q |
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| T |
41823253 |
ttgttgatgctcttattcttatatcaattaatttgcaaaaatagaatatgcttaatttactatttgatgtttattgttatgatcaatgagtc |
41823162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 274 - 371
Target Start/End: Complemental strand, 41823098 - 41822999
Alignment:
| Q |
274 |
gacagtttgaattgcatgacttgtgatttatgtattgtgttctctagtttttatttg--gtgattttgatctttcactataattacctatcacctatgct |
371 |
Q |
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| T |
41823098 |
gacagtttgaattgcatgacttgtgatttatgtattgtgttctctagtttttatttggtgtgattttgatctttcactataattacctatctcctatgct |
41822999 |
T |
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