View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3455_high_15 (Length: 364)

Name: NF3455_high_15
Description: NF3455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3455_high_15
NF3455_high_15
[»] chr8 (4 HSPs)
chr8 (165-298)||(26259007-26259139)
chr8 (292-348)||(26259165-26259221)
chr8 (37-99)||(32019827-32019889)
chr8 (42-86)||(40642366-40642410)
[»] chr2 (3 HSPs)
chr2 (34-101)||(26179552-26179619)
chr2 (98-156)||(2758483-2758541)
chr2 (54-101)||(2757820-2757867)
[»] chr7 (3 HSPs)
chr7 (34-101)||(38095440-38095507)
chr7 (42-101)||(26788987-26789046)
chr7 (96-156)||(40261512-40261572)
[»] chr3 (3 HSPs)
chr3 (2-101)||(47955996-47956095)
chr3 (98-159)||(47955221-47955282)
chr3 (99-159)||(47956121-47956181)
[»] chr1 (2 HSPs)
chr1 (96-156)||(38002938-38002998)
chr1 (96-156)||(38003607-38003667)
[»] chr5 (1 HSPs)
chr5 (96-160)||(294999-295063)


Alignment Details
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 165 - 298
Target Start/End: Original strand, 26259007 - 26259139
Alignment:
Q  165 tatagtaattgtaattctcatcccaacttgagagattaatgtatgatgttgaaccaagagggcattcaattnnnnnnnnnnnggaaatgtattagttcat 264  Q
    |||| ||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||           |||| |||||||||||||    
T  26259007 tataataattgtaattctcatcccgactcgagagattaatgtatgatgttgtaccaagagggcattcaatt-taaaaaaaaaggaagtgtattagttcat 26259105  T
Q  265 taatttcattaacttgctactattaataactagt 298  Q
    |||||||||||||||||| |||||||||||||||    
T  26259106 taatttcattaacttgctgctattaataactagt 26259139  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 292 - 348
Target Start/End: Original strand, 26259165 - 26259221
Alignment:
Q  292 aactagttatcatttctctattctttatcagcgacattaaggctttattgcaaaaat 348  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||    
T  26259165 aactagttatcatttctctattctttatcagcaacattaatgcttttttgcaaaaat 26259221  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 32019827 - 32019889
Alignment:
Q  37 gcttagttaacagagaactaacagtgttacatgataggggaggtgtttgtatatttgaataaa 99  Q
    |||||||||||||||||||||| |||||| || |||||||||| ||||||| |||||||||||    
T  32019827 gcttagttaacagagaactaacggtgttatataataggggaggcgtttgtagatttgaataaa 32019889  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 40642366 - 40642410
Alignment:
Q  42 gttaacagagaactaacagtgttacatgataggggaggtgtttgt 86  Q
    |||| ||||| || |||||||||||||||||||||||||||||||    
T  40642366 gttaccagagcaccaacagtgttacatgataggggaggtgtttgt 40642410  T

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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 26179552 - 26179619
Alignment:
Q  34 gaagcttagttaacagagaactaacagtgttacatgataggggaggtgtttgtatatttgaataaaaa 101  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  26179552 gaagcttagttaacagagaactaacagtgttacatgataggggtggtgtttgtagatttgaataaaaa 26179619  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 156
Target Start/End: Original strand, 2758483 - 2758541
Alignment:
Q  98 aaaactagagggaatgtcagtgctatttaagaataccttaagggaggcgagtgtaattt 156  Q
    |||| ||||||| |||| |||| |||||||||| ||||||||||||| |||||||||||    
T  2758483 aaaattagaggggatgttagtgttatttaagaagaccttaagggaggtgagtgtaattt 2758541  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 2757867 - 2757820
Alignment:
Q  54 ctaacagtgttacatgataggggaggtgtttgtatatttgaataaaaa 101  Q
    ||||| |||||||||||||||||||||| ||||| |||| ||||||||    
T  2757867 ctaacggtgttacatgataggggaggtgcttgtaaatttaaataaaaa 2757820  T

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Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 38095440 - 38095507
Alignment:
Q  34 gaagcttagttaacagagaactaacagtgttacatgataggggaggtgtttgtatatttgaataaaaa 101  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||||| || ||||||||||    
T  38095440 gaagcttagttaacagagaactaacggtgttacatgataggggtggtgtttgtagatatgaataaaaa 38095507  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 26788987 - 26789046
Alignment:
Q  42 gttaacagagaactaacagtgttacatgataggggaggtgtttgtatatttgaataaaaa 101  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  26788987 gttaacacagaactaacagtgttacatgataggggtggtgtttgtagatttgaataaaaa 26789046  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 40261512 - 40261572
Alignment:
Q  96 taaaaactagagggaatgtcagtgctatttaagaataccttaagggaggcgagtgtaattt 156  Q
    |||||||||||||| |||| ||||  || |||||||||||||||||||| || ||||||||    
T  40261512 taaaaactagaggggatgttagtgtcatataagaataccttaagggaggtgactgtaattt 40261572  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 47955996 - 47956095
Alignment:
Q  2 tgaatggtagggggagccgtttttccggcagagaagcttagttaacagagaactaacagtgttacatgataggggaggtgtttgtatatttgaataaaaa 101  Q
    ||||||||||||||||  |||||| || ||  |||||| |||||||||||||| ||| ||||||||||| ||||| |||||||||| |||||| ||||||    
T  47955996 tgaatggtagggggagtagttttttcgacaaggaagctaagttaacagagaaccaacggtgttacatgacaggggtggtgtttgtagatttgattaaaaa 47956095  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 47955282 - 47955221
Alignment:
Q  98 aaaactagagggaatgtcagtgctatttaagaataccttaagggaggcgagtgtaatttacc 159  Q
    ||||||||||||  ||| ||||||||||||||| || | |||||||| ||||||||||||||    
T  47955282 aaaactagagggggtgttagtgctatttaagaaaacttcaagggaggtgagtgtaatttacc 47955221  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 47956121 - 47956181
Alignment:
Q  99 aaactagagggaatgtcagtgctatttaagaataccttaagggaggcgagtgtaatttacc 159  Q
    |||||||||||  ||| ||||||||||||||| |||| ||| |||| ||||||||||||||    
T  47956121 aaactagagggggtgttagtgctatttaagaagacctcaagagaggtgagtgtaatttacc 47956181  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 38002998 - 38002938
Alignment:
Q  96 taaaaactagagggaatgtcagtgctatttaagaataccttaagggaggcgagtgtaattt 156  Q
    |||||||||||||| |||| ||||||||||||||| |||| |||||||| |||||||||||    
T  38002998 taaaaactagaggggatgttagtgctatttaagaaaacctaaagggaggtgagtgtaattt 38002938  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 38003607 - 38003667
Alignment:
Q  96 taaaaactagagggaatgtcagtgctatttaagaataccttaagggaggcgagtgtaattt 156  Q
    |||||| |||||||  ||| ||||||||||||||| ||||||||||||| |||||||||||    
T  38003607 taaaaagtagaggggttgttagtgctatttaagaagaccttaagggaggtgagtgtaattt 38003667  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 294999 - 295063
Alignment:
Q  96 taaaaactagagggaatgtcagtgctatttaagaataccttaagggaggcgagtgtaatttacct 160  Q
    ||||||||||||||  ||| ||||  |||||||||||||| |||||||| |||||||||||||||    
T  294999 taaaaactagagggggtgttagtgtcatttaagaatacctgaagggaggtgagtgtaatttacct 295063  T

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