View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3455_high_18 (Length: 344)
Name: NF3455_high_18
Description: NF3455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3455_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 91 - 329
Target Start/End: Original strand, 53880720 - 53880958
Alignment:
| Q |
91 |
tcaacatgacataaaatcattaacacccaaaaacatcaatcacggtctgctggatcctgatcgaaccaccatctcccgaaacatcaaagctaggaagcac |
190 |
Q |
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| T |
53880720 |
tcaacatgacataaaatcattaacacccaaaaacatcaatcacggtctgctggatcctgatcgaaccaccatctcccgaaacatcaaagctaggaagcac |
53880819 |
T |
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| Q |
191 |
ttgacaacctacaaaagaaattaaagtgaacaatccccaacgggatgagcgactaggacaaggtcccactaccagagatagggcgacctagaacgcctcc |
290 |
Q |
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| T |
53880820 |
ttgacaacctacaaaagaaattaaagtgaacaatccccaacgggatgagcgactaggacaaggtcccactaccagagatagggcgacctagaacgcctcc |
53880919 |
T |
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| Q |
291 |
tatacgtaataatattgggcttcaacatatgacataggt |
329 |
Q |
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| T |
53880920 |
tatacataataatattgggctccaacatacgacataggt |
53880958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 91 - 329
Target Start/End: Original strand, 53886834 - 53887072
Alignment:
| Q |
91 |
tcaacatgacataaaatcattaacacccaaaaacatcaatcacggtctgctggatcctgatcgaaccaccatctcccgaaacatcaaagctaggaagcac |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53886834 |
tcaacatgacataaaatcattaacacccaaaaacatcaatcacggtctgctggatcctgatcgaaccaccatctcccgaaacatcaaagctaggaagcac |
53886933 |
T |
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| Q |
191 |
ttgacaacctacaaaagaaattaaagtgaacaatccccaacgggatgagcgactaggacaaggtcccactaccagagatagggcgacctagaacgcctcc |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53886934 |
ttgacaacctacaaaagaaattaaagtgaacaatccccaacgggatgagcgactaggacaaggtcccactaccagagatagggcgacctagaacgcctcc |
53887033 |
T |
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| Q |
291 |
tatacgtaataatattgggcttcaacatatgacataggt |
329 |
Q |
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| T |
53887034 |
tatacataataatattgggctccaacatacgacataggt |
53887072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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