View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3455_high_25 (Length: 251)
Name: NF3455_high_25
Description: NF3455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3455_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 55665056 - 55664866
Alignment:
| Q |
1 |
ttacccaaatatttctaattaaatttaactttttattgcgtaaagaactatagattaaaatttgaaatattataacctgaaatcattgataggtatgttt |
100 |
Q |
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| T |
55665056 |
ttacccaattatttctaattaaatttaactttttattgcgtaaagaactataaattaaaatttgaaatattataacctgaaatcattgataggtatgttt |
55664957 |
T |
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| Q |
101 |
tgtaagtctaattttattaagagaaaacatcaaagtgcaataggatgtggttgttgaagctggattgatagttatataaatattagcctag |
191 |
Q |
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| T |
55664956 |
tgtaagtctaattttattaagagtaaacatcaaagtgcaataggatgtggttgttgaagctggattgatagttatataaatattagcctag |
55664866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 54 - 191
Target Start/End: Original strand, 54627767 - 54627899
Alignment:
| Q |
54 |
attaaaatttgaaatattataacctgaaatcattgataggtatgttttgtaagtctaattttattaagagaaaacatcaaagtgcaataggatgtggttg |
153 |
Q |
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| T |
54627767 |
attaaaatttgaaatattatagtctgtaattattgattggtaagttttgtaagtctaatttgattaagagaaaacaccaaaatgc-----tatgtggttg |
54627861 |
T |
|
| Q |
154 |
ttgaagctggattgatagttatataaatattagcctag |
191 |
Q |
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| T |
54627862 |
ttgaagcttgatagagaattttagaaatattagcctag |
54627899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 168
Target Start/End: Original strand, 55636063 - 55636134
Alignment:
| Q |
97 |
gttttgtaagtctaattttattaagagaaaacatcaaagtgcaataggatgtggttgttgaagctggattga |
168 |
Q |
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| T |
55636063 |
gttttgtaactctaattttattaagagaaaacaccaaaatactatagtatgtggttgttgaagcttgattga |
55636134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 55635985 - 55636046
Alignment:
| Q |
54 |
attaaaatttgaaatattataacctgaaatcattgataggtatgttttgtaagtctaatttt |
115 |
Q |
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| T |
55635985 |
attaaaatttgaaatgttgtaacctgaaattattgataggtaagttttgtaactctaatttt |
55636046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 52985261 - 52985206
Alignment:
| Q |
65 |
aaatattataacctgaaatcattgataggtatgttttgtaagtctaattttattaa |
120 |
Q |
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| T |
52985261 |
aaatattatatcctgaaactattgataggtaaattttgtaagtctaatttgattaa |
52985206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 83
Target Start/End: Complemental strand, 54861575 - 54861546
Alignment:
| Q |
54 |
attaaaatttgaaatattataacctgaaat |
83 |
Q |
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| T |
54861575 |
attaaaatttgaaatattataacctgaaat |
54861546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 134
Target Start/End: Original strand, 9890255 - 9890337
Alignment:
| Q |
54 |
attaaaatttgaaatattataacctgaaatcattgataggtatgttttgta--agtctaattttattaagagaaaacatcaaa |
134 |
Q |
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| T |
9890255 |
attaaaatttgaaatattataacctgaaactattgataggtaagttttgtaagagtctaatttgattaatagaaaacaccaaa |
9890337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 170
Target Start/End: Original strand, 13402240 - 13402357
Alignment:
| Q |
54 |
attaaaatttgaaatattataacct-gaaatcattgataggtatgttttgtaagtctaattttattaagagaaaacatcaaagtgcaataggatgtggtt |
152 |
Q |
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|||||||||||||||| ||||| || ||||| |||||||| || ||||| ||||||||||| ||| || ||||||| |||| ||| | || |||||||| |
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| T |
13402240 |
attaaaatttgaaataatataaacttgaaattattgatagttaaattttgcaagtctaatttgatttagggaaaacaccaaaatgctaaagtatgtggtt |
13402339 |
T |
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| Q |
153 |
gttgaagctggattgata |
170 |
Q |
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| T |
13402340 |
gttgaagcttgattgata |
13402357 |
T |
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