View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3455_high_29 (Length: 239)
Name: NF3455_high_29
Description: NF3455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3455_high_29 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 30965610 - 30965397
Alignment:
| Q |
17 |
aactagaacaagttatatttttaagctcaacaaaaagaagttatatggaatttcatagattagacatcactaattttccaataaacatgcaaactaagtt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
30965610 |
aactagaacaagttatatttttaagctcaacaaaaagaa------tggaatttcatagattagacatcaccaattatccaataaacatgcaaactaagtt |
30965517 |
T |
|
| Q |
117 |
gaagttcttgttcagaaaaattctaagatataacatacaggacacatcgactagtgtcaatatcatttccctatttgggatatggaattttaatctatat |
216 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
30965516 |
gaagttcttattcagaaaaattctaagatataacatacag---acatcgactagtgtcaatatcatttccctaattgggagatggaattttaatctatat |
30965420 |
T |
|
| Q |
217 |
gaaaaaccccatttcctccaaac |
239 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
30965419 |
gaaaaaccccatttcctccaaac |
30965397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University