View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3455_high_30 (Length: 236)
Name: NF3455_high_30
Description: NF3455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3455_high_30 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 3158909 - 3158783
Alignment:
| Q |
1 |
agaccatgaagtgttctctgcgcatgcgcccatttaagttcgcgctcttcctttccaaaatctttcttccttgtaaaggcaatctgaaaatgatttcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3158909 |
agaccatgaagtgttctctgcgcatgcgcccatttaagttcgcgctcttcctttccaaaatctttcttccttgtaaaggcaatctgaaaatgatttcatt |
3158810 |
T |
|
| Q |
101 |
ctactagttaagcaccggaccatgttt |
127 |
Q |
| |
|
|||||||||||| |||||||||||||| |
|
|
| T |
3158809 |
ctactagttaagtaccggaccatgttt |
3158783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 127 - 221
Target Start/End: Complemental strand, 3158683 - 3158589
Alignment:
| Q |
127 |
tcaattagtctcacaagtgcttaatatcaataaaaaagctcaaataacctaattcaacaagcccttactctaatttaaccgatagagaagaaaac |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3158683 |
tcaattagtctcacaagtgcttaatatcaataaaaaagctcaaataacctaattcaacaagcccttactctaatttaacagatagagaagaaaac |
3158589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University