View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3455_high_4 (Length: 617)
Name: NF3455_high_4
Description: NF3455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3455_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 1 - 599
Target Start/End: Complemental strand, 6407440 - 6406842
Alignment:
| Q |
1 |
cacctacattgtcacataataatagaggtggtttcgacaatggtatatgaagctcttgaagcaaattttgaagccacatgagttcaacagatgcagtggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
6407440 |
cacctacattgtcacataataatagaggtggtttcgacaatggtatatgaagctcttgaagcaaattttgaagccacatgagttcagcagatgtagtggc |
6407341 |
T |
|
| Q |
101 |
tacaacacggtattcagcctcggttgatgatcgtgctacagtacgttgttttcgtgatagccaagaaataggattacctccaaaaaagataagatatgct |
200 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6407340 |
tacagcacggtattcagcctcagttgatgatcgtgctacagtacgttgtttttgtgatagccaagaaataggattacctccaaaaaagataagatatgct |
6407241 |
T |
|
| Q |
201 |
gatgttgaggtgcggtcatccatatttcctccccagtctgcatctgtaaaggcaagaagattgaatgaggatggtttctttaagagtatgccaaagttaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6407240 |
gatgttgaggtgcggtcatccatatttcctccccagtctgcatctgtaaaggcaagaagattgaatgaggatggtttctttaagagtatgccaaagttaa |
6407141 |
T |
|
| Q |
301 |
tggttcccttaatgtagcgaagtagccgctttaaatgttgaagatgaagggatgtaggtttatgcatgaattgggagagcttgttgattgcaaatgagag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6407140 |
tggttcccttaatgtagcgaagtagccgctttaaatgttgaagatgaagggatgtaggtttatgcaagaattgggagagcttgttgattgcaaatgagag |
6407041 |
T |
|
| Q |
401 |
atcaggccgtgtcaggttgagatactgaagggagccaagaatttttctgtagtgtgtggggttagtggcggtggtgccatcatgaatggtgaggatagct |
500 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6407040 |
atcaggtcgtgtcaggttgagatactgaagggagccaagaatttttctgtagtgtgtggagttagtggcggtggtgccatcatgaatggtgaggatagct |
6406941 |
T |
|
| Q |
501 |
gttggtgacaaaggtgtgggcgctggttttgcaccatccatatcaaatttctcaagaatttttctaataaatttatgttgagataagaacaatcctttg |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6406940 |
gttggtgacaaaggtgtgggcgctggttttgcaccatccatatcaaatttctcaagaatttctctaataaatttatgttgagataagaacaatcctttg |
6406842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 445; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 143 - 599
Target Start/End: Original strand, 40112935 - 40113391
Alignment:
| Q |
143 |
acgttgttttcgtgatagccaagaaataggattacctccaaaaaagataagatatgctgatgttgaggtgcggtcatccatatttcctccccagtctgca |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40112935 |
acgttgttttcgtgatagccaagaaataggattacctccaaaaaagataagatatgctgatgttgaggtgcggtcatccatatttcctccccagtctgca |
40113034 |
T |
|
| Q |
243 |
tctgtaaaggcaagaagattgaatgaggatggtttctttaagagtatgccaaagttaatggttcccttaatgtagcgaagtagccgctttaaatgttgaa |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40113035 |
tctgtaaaggcaagaagattgaatgaggatggtttctttaagagtatgccaaagttaatggttcccttaatgtagcgaagtagccgctttaaatgttgaa |
40113134 |
T |
|
| Q |
343 |
gatgaagggatgtaggtttatgcatgaattgggagagcttgttgattgcaaatgagagatcaggccgtgtcaggttgagatactgaagggagccaagaat |
442 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40113135 |
gatgaagggatataggtttatgcatgaattgggagagcttgttgattgcaaatgagagatcaggccgtgtcagattgagatactgaagggagccaagaat |
40113234 |
T |
|
| Q |
443 |
ttttctgtagtgtgtggggttagtggcggtggtgccatcatgaatggtgaggatagctgttggtgacaaaggtgtgggcgctggttttgcaccatccata |
542 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40113235 |
ttttctgtagtgtgtggggttagtggcggtggtgccatcatgaatggtgaggatagctgttggtgacaaaggtgtgggcgctggttttgcaccatccata |
40113334 |
T |
|
| Q |
543 |
tcaaatttctcaagaatttttctaataaatttatgttgagataagaacaatcctttg |
599 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40113335 |
tcaaatttctcaagaatttctctaataaatttatgttgagataagaacaatcctttg |
40113391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 40094490 - 40094636
Alignment:
| Q |
1 |
cacctacattgtcacataataatagaggtggtttcgacaatggtatatgaagctcttgaagcaaattttgaagccacatgagttcaacagatgcagtggc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
40094490 |
cacctacattgtcacataataatagaggtggtttcgacaatggtatatgaagctcttgaagcaaattttgaagccacgtgagttcagcagatgcagtggc |
40094589 |
T |
|
| Q |
101 |
tacaacacggtattcagcctcggttgatgatcgtgctacagtacgtt |
147 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40094590 |
tacagcacggtattcagcctcggttgatgatcgtgctacagtacgtt |
40094636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 144 - 247
Target Start/End: Complemental strand, 2662641 - 2662538
Alignment:
| Q |
144 |
cgttgttttcgtgatagccaagaaataggattacctccaaaaaagataagatatgctgatgttgaggtgcggtcatccatatttcctccccagtctgcat |
243 |
Q |
| |
|
|||||||| | ||| ||||||||||||||||||||||||| | | || |||||||| ||||| || || |||||||| ||||| || ||||| || |||| |
|
|
| T |
2662641 |
cgttgtttccttgagagccaagaaataggattacctccaagatatattagatatgcagatgtggaagtacggtcatcgatattgccaccccaatcagcat |
2662542 |
T |
|
| Q |
244 |
ctgt |
247 |
Q |
| |
|
|||| |
|
|
| T |
2662541 |
ctgt |
2662538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 354 - 418
Target Start/End: Original strand, 9004961 - 9005025
Alignment:
| Q |
354 |
gtaggtttatgcatgaattgggagagcttgttgattgcaaatgagagatcaggccgtgtcaggtt |
418 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||||| |||||||||| ||| |||||||| ||||| |
|
|
| T |
9004961 |
gtaggtttgtgcatgaattgagagagtttgttgacagcaaatgagacatcgggccgtgtgaggtt |
9005025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 9004766 - 9004827
Alignment:
| Q |
159 |
agccaagaaataggattacctccaaaaaagataagatatgctgatgttgaggtgcggtcatc |
220 |
Q |
| |
|
|||||||| ||||||||||| |||||||| |||||||| ||||| || || ||||| ||||| |
|
|
| T |
9004766 |
agccaagagataggattaccaccaaaaaatataagatacgctgaagtggatgtgcgatcatc |
9004827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 320 - 408
Target Start/End: Complemental strand, 2662465 - 2662377
Alignment:
| Q |
320 |
aagtagccgctttaaatgttgaagatgaagggatgtaggtttatgcatgaattgggagagcttgttgattgcaaatgagagatcaggcc |
408 |
Q |
| |
|
||||||||| || | |||||||| ||| || |||||| |||||||||||||| ||||| |||||||| ||||| || || ||||||| |
|
|
| T |
2662465 |
aagtagccgtttgagatgttgaaaatggagacttgtaggcttatgcatgaattgagagagtttgttgatggcaaaggaaaggtcaggcc |
2662377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 72 - 405
Target Start/End: Original strand, 653990 - 654322
Alignment:
| Q |
72 |
agccacatgagttcaacagatgcagtggctacaacacggtattcagcctcggttgatgatcgtgctacagtacgttgttttcgtgatagccaagaaatag |
171 |
Q |
| |
|
||||||| |||||| ||| ||||||||| || |||||||||||||||| ||||| || ||||||||||| |||||||| ||||||| |||||| | | |
|
|
| T |
653990 |
agccacactagttcagcagttgcagtggccactgcacggtattcagcctcagttgaaga-cgtgctacagtgcgttgtttgcgtgataaccaagaggtgg |
654088 |
T |
|
| Q |
172 |
gattacctccaaaaaagataagatatgctgatgttgaggtgcggtcatccatatttcctccccagtctgcatctgtaaaggcaagaagattgaatgagga |
271 |
Q |
| |
|
| |||| | ||| ||| || |||||||| |||| || ||||| || |||||||| || |||||||||||||| || || ||| ||||| ||| || || |
|
|
| T |
654089 |
ggttactttcaagaaaaatgagatatgcaaatgtggatgtgcgatcttccatattgccaccccagtctgcatccgtgaaagcataaagatggaaggatga |
654188 |
T |
|
| Q |
272 |
tggtttctttaagagtatgccaaagttaatggttcccttaatgtagcgaagtagccgctttaaatgttgaagatgaagggatgtaggtttatgcatgaat |
371 |
Q |
| |
|
||||| ||| | | |||||||| |||||||| |||| | || |||||||| | ||||| |||||| |||||||| ||||| ||||| | ||||||| |
|
|
| T |
654189 |
tggttgcttcagaaaaatgccaaaattaatggtagcctttagataacgaagtagtctctttagatgttgcagatgaagtgatgttggtttgtacatgaat |
654288 |
T |
|
| Q |
372 |
tgggagagcttgttgattgcaaatgagagatcag |
405 |
Q |
| |
|
|| || ||||||||||| |||| ||| ||||||| |
|
|
| T |
654289 |
tgagaaagcttgttgatggcaattgaaagatcag |
654322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 93 - 213
Target Start/End: Original strand, 3690402 - 3690522
Alignment:
| Q |
93 |
gcagtggctacaacacggtattcagcctcggttgatgatcgtgctacagtacgttgttttcgtgatagccaagaaataggattacctccaaaaaagataa |
192 |
Q |
| |
|
|||||||| || |||| ||||| ||||| || ||||||||||| || ||||||||||| | ||| ||||| || ||||||||||| |||||||| |||| |
|
|
| T |
3690402 |
gcagtggcaactgcacgatattctgcctcagtggatgatcgtgccacggtacgttgtttccttgagagccatgagataggattaccaccaaaaaatataa |
3690501 |
T |
|
| Q |
193 |
gatatgctgatgttgaggtgc |
213 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
3690502 |
tatatgctgatgtggaggtgc |
3690522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 93 - 220
Target Start/End: Complemental strand, 32074185 - 32074058
Alignment:
| Q |
93 |
gcagtggctacaacacggtattcagcctcggttgatgatcgtgctacagtacgttgttttcgtgatagccaagaaataggattacctccaaaaaagataa |
192 |
Q |
| |
|
|||||||| || |||| ||||| ||||| | ||||||||||| || ||||||||||| | ||| ||||| || ||||||||||| |||||||| |||| |
|
|
| T |
32074185 |
gcagtggcaactgcacgatattctgcctcaatggatgatcgtgccacggtacgttgtttccttgagagccatgagataggattaccaccaaaaaatataa |
32074086 |
T |
|
| Q |
193 |
gatatgctgatgttgaggtgcggtcatc |
220 |
Q |
| |
|
|||||||||||| |||||||| ||||| |
|
|
| T |
32074085 |
tatatgctgatgtggaggtgcgatcatc |
32074058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 111 - 247
Target Start/End: Complemental strand, 3019741 - 3019605
Alignment:
| Q |
111 |
tattcagcctcggttgatgatcgtgctacagtacgttgttttcgtgatagccaagaaataggattacctccaaaaaagataagatatgctgatgttgagg |
210 |
Q |
| |
|
||||||||||| || ||||| | || || || |||||||| | ||| ||||||||||||||||||||||||||| | || |||||||| ||||| || | |
|
|
| T |
3019741 |
tattcagcctcagtggatgacctagcaacggtgcgttgtttccttgagagccaagaaataggattacctccaaaatatattagatatgcagatgtggaag |
3019642 |
T |
|
| Q |
211 |
tgcggtcatccatatttcctccccagtctgcatctgt |
247 |
Q |
| |
|
| |||||||| ||||| || |||| || |||||||| |
|
|
| T |
3019641 |
tacggtcatcaatattgccatcccaatcagcatctgt |
3019605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 421
Target Start/End: Complemental strand, 3019532 - 3019431
Alignment:
| Q |
320 |
aagtagccgctttaaatgttgaagatgaagggatgtaggtttatgcatgaattgggagagcttgttgattgcaaatgagagatcaggccgtgtcaggttg |
419 |
Q |
| |
|
||||||||| || | |||||||| ||| || |||||| |||||||||||||| ||||| |||||||| ||||| || || ||||||| ||| || ||| |
|
|
| T |
3019532 |
aagtagccgtttgagatgttgaaaatggagacttgtaggcttatgcatgaattgagagagtttgttgatggcaaaggaaaggtcaggccttgtgagattg |
3019433 |
T |
|
| Q |
420 |
ag |
421 |
Q |
| |
|
|| |
|
|
| T |
3019432 |
ag |
3019431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 93 - 220
Target Start/End: Original strand, 28083395 - 28083522
Alignment:
| Q |
93 |
gcagtggctacaacacggtattcagcctcggttgatgatcgtgctacagtacgttgttttcgtgatagccaagaaataggattacctccaaaaaagataa |
192 |
Q |
| |
|
|||||||| || |||| ||||| ||||| | ||||||||||| || ||||||||||| | ||| ||||| || ||||||||||| |||||||| |||| |
|
|
| T |
28083395 |
gcagtggcaactgcacgatattctgcctcattggatgatcgtgccacggtacgttgtttccttgagagccatgagataggattaccaccaaaaaatataa |
28083494 |
T |
|
| Q |
193 |
gatatgctgatgttgaggtgcggtcatc |
220 |
Q |
| |
|
|||||||||||| |||||||| ||||| |
|
|
| T |
28083495 |
tatatgctgatgtggaggtgcgatcatc |
28083522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 1109102 - 1109163
Alignment:
| Q |
159 |
agccaagaaataggattacctccaaaaaagataagatatgctgatgttgaggtgcggtcatc |
220 |
Q |
| |
|
|||||||| ||||||||||| |||||||| |||||||| ||||| || || ||||| ||||| |
|
|
| T |
1109102 |
agccaagagataggattaccaccaaaaaatataagatacgctgaagtggatgtgcgatcatc |
1109163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University