View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3455_high_5 (Length: 590)
Name: NF3455_high_5
Description: NF3455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3455_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 348
Target Start/End: Complemental strand, 16087763 - 16087433
Alignment:
| Q |
18 |
ttttaaactattattttgagcaaaatgtgtttgagacaagttaacatgaaattaacaaatagaaatattttattagatgtggattacttactatgtcatc |
117 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16087763 |
tttttaactattattttgagcaaaatgtgtttgagacaagttaacgtgaaattaacaaatagaaatattttattagatgtggattacttactatgtcatc |
16087664 |
T |
|
| Q |
118 |
ttttgataaactttaattagtgaaatattattttaaacttggttctcatgaatatatgatatttatagtgggagaattcctttttaacaattttgtgtgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16087663 |
ttttgataaactttaattagtgaaatattattttaaacttggttctcatgaatatatgatatttatagtgggagaattcctttttaacaattttgtgtgt |
16087564 |
T |
|
| Q |
218 |
gtataaatgagaactatgatagcatcttagaagttagaatactttaaacttaatcatcatgagctgaagtagtgattcatgtaatattgttttgagctat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16087563 |
gtataaatgagaactatgatagcatcttagaagttagaatactttaaacttaatcatcatgagctgaagtagtgattcatgtaatattgttttgagctat |
16087464 |
T |
|
| Q |
318 |
tttcttatgtctttaatccttggtgcttatt |
348 |
Q |
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| T |
16087463 |
tttcttatgtctttaatccttggtgcttatt |
16087433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 416 - 575
Target Start/End: Complemental strand, 16087434 - 16087279
Alignment:
| Q |
416 |
ttagagtatgagagtgtgcgattttgactttctaaaatcttgagtcattatgttggaacgtataatcatattataatgtaacgtgtaaagttctttgaac |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
16087434 |
ttagagtatgagagtgtgcgattttgactttctaaaatcttgagtcactatgttggaacatataatcatattataatgtg----gtaaagttctttgaac |
16087339 |
T |
|
| Q |
516 |
cgagcgcctgactaatatgttaaacatgtttgctttttaaagctttgctggtttataggc |
575 |
Q |
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| T |
16087338 |
cgagcgcctgactaatatgttaaacatgtttgctttttaaagctttgctggtttataggc |
16087279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 1e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 38643247 - 38643027
Alignment:
| Q |
20 |
ttaaactattattttgagcaaaatgtgtttgagacaagttaacatgaaattaacaaatagaaatattttattagatgtggattacttactatgtcatctt |
119 |
Q |
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||||||||||| |||||||||||| |||||| |||| ||| |||||| |||| || |||||||||||||||||||||| ||||||||||||||| || |
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| T |
38643247 |
ttaaactattactttgagcaaaatacgtttgaaacaaattatagtgaaataaacagattgaaatattttattagatgtggaatacttactatgtcat-tt |
38643149 |
T |
|
| Q |
120 |
ttgataaactttaatt-agtgaaatattattttaaacttggttctcatgaatatatgatatttatagtgggagaattcctttttaacaattt------tg |
212 |
Q |
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|||||||| ||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||| || |
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| T |
38643148 |
ttgataaagtttaatttagtgaaatattattttagtcttggttctcatgaatatgtgatatttatagtaggagaattcctttttaacatttttttttgtg |
38643049 |
T |
|
| Q |
213 |
tgtgtgtataaatgagaactat |
234 |
Q |
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|||||||||||||||||||||| |
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| T |
38643048 |
tgtgtgtataaatgagaactat |
38643027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 140 - 233
Target Start/End: Original strand, 19974422 - 19974514
Alignment:
| Q |
140 |
aaatattattttaaacttggttctcatgaatatatgatatttatagtgggagaattcctttttaacaattttgtgtgtgtataaatgagaacta |
233 |
Q |
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|||||||| |||||| ||||| ||||||| ||| || |||||| ||||||||||||| |||||||| ||||| ||||||||| |||||| |||| |
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| T |
19974422 |
aaatattaatttaaatttggtgctcatgagtatgtggtatttacagtgggagaattcttttttaacgatttt-tgtgtgtatgaatgaggacta |
19974514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 53838144 - 53838100
Alignment:
| Q |
230 |
actatgatagcatcttagaagttagaatactttaaacttaatcat |
274 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
53838144 |
actatgatagcatcttagaagttagaataccttaagcttaatcat |
53838100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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