View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3455_high_8 (Length: 450)

Name: NF3455_high_8
Description: NF3455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3455_high_8
NF3455_high_8
[»] chr2 (15 HSPs)
chr2 (18-417)||(38044883-38045297)
chr2 (18-267)||(38042896-38043145)
chr2 (18-267)||(38067243-38067492)
chr2 (20-265)||(38019184-38019432)
chr2 (18-265)||(38028256-38028503)
chr2 (401-440)||(38045315-38045354)
chr2 (207-261)||(38022059-38022113)
chr2 (207-261)||(38046593-38046647)
chr2 (213-268)||(38003630-38003685)
chr2 (213-268)||(38031881-38031936)
chr2 (215-261)||(38033963-38034009)
chr2 (26-75)||(38033801-38033850)
chr2 (211-258)||(38069108-38069155)
chr2 (340-381)||(38043179-38043220)
chr2 (340-381)||(38067526-38067567)
[»] chr7 (2 HSPs)
chr7 (209-271)||(42403947-42404008)
chr7 (58-148)||(42403806-42403888)


Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 417
Target Start/End: Original strand, 38044883 - 38045297
Alignment:
Q  18 cagcaggcagtgttgcagttgttgaagcattgaaagatcaaggaatatgcagatggaatcataccctaaagtcactccaaaatcatgtcaaaaacaatgt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| | |||||||||||    
T  38044883 cagcaggcagtgttgcagttgttgaagcattgaaagatcaaggaatatgcagatggaatcttaccctaaagtcacttcaaaatcattttaaaaacaatgt 38044982  T
Q  118 caggtcgttttctcaagcaaagaaactttcatcgtctt---------------cttcttcttctgctatggctcttaattctaatagacaacaacataag 202  Q
     || |||||||| |||||||||||||||||||| ||||               |||||||||||||||||| |  || |||||| |||||| || | ||     
T  38044983 gagatcgttttcccaagcaaagaaactttcatcctctttttcttcttcttcttcttcttcttctgctatggtttctatttctaagagacaaaaagagaat 38045082  T
Q  203 gcagagcaatcagaggaatctttgaggacagtcatgtacttgagttgctggggtcccaattaattagaggagatcatagaactaatttttaactctatta 302  Q
    ||| ||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38045083 gcaaagcaatcggaggaatctttgaggaaggtcatgtacttgagttgctggggtcccaattaattagaggagatcatagaactaatttttaactctatta 38045182  T
Q  303 tttgatctttcttcatgtataatgtattgcacaatatttgaaagagattaatgtaaattatgatgaattgatgaagatagcaaccttgaatttctctgaa 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38045183 tttgatctttcttcatgtataatgtattgcacaatatttgaaagagattaatgtaaattatgatgaattgatgaagatagcaaccttgaatttctctgaa 38045282  T
Q  403 attcaggattattct 417  Q
    |||||||||||||||    
T  38045283 attcaggattattct 38045297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 38042896 - 38043145
Alignment:
Q  18 cagcaggcagtgttgcagttgttgaagcattgaaagatcaaggaatatgcagatggaatcataccctaaagtcactccaaaatcatgtcaaaaacaatgt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | ||||||||||| |||||||||||    
T  38042896 cagcaggcagtgttgcagttgttgaagcattgaaagatcaaggaatatgcagatggaatcatacactaaaatcagttcaaaatcatgttaaaaacaatgt 38042995  T
Q  118 caggtcgttttctcaagcaaagaaactttcatcgtcttcttcttcttctgctatggctcttaa---ttctaatagacaacaacataaggcagagcaatca 214  Q
    ||| || ||||||||||||||||| ||||||   || ||||| ||||||||||||| |  |||   |||||| ||||||  | | ||| || ||||||||    
T  38042996 cagatcattttctcaagcaaagaagctttca---tcctcttcctcttctgctatggtttctaattcttctaagagacaaagagagaagacaaagcaatca 38043092  T
Q  215 gaggaatctttgaggacagtcatgtacttgagttgctggggtcccaattaatt 267  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  38043093 gaggaatctttgaggaaagtcatgtacttgagttgttggggtcccaattaatt 38043145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 38067243 - 38067492
Alignment:
Q  18 cagcaggcagtgttgcagttgttgaagcattgaaagatcaaggaatatgcagatggaatcataccctaaagtcactccaaaatcatgtcaaaaacaatgt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | ||||||||||| |||||||||||    
T  38067243 cagcaggcagtgttgcagttgttgaagcattgaaagatcaaggaatatgcagatggaatcatacactaaaatcagttcaaaatcatgttaaaaacaatgt 38067342  T
Q  118 caggtcgttttctcaagcaaagaaactttcatcgtcttcttcttcttctgctatggctcttaa---ttctaatagacaacaacataaggcagagcaatca 214  Q
    ||| || ||||||||||||||||| ||||||   || ||||| ||||||||||||| |  |||   |||||| ||||||  | | ||| || ||||||||    
T  38067343 cagatcattttctcaagcaaagaagctttca---tcctcttcctcttctgctatggtttctaattcttctaagagacaaagagagaagacaaagcaatca 38067439  T
Q  215 gaggaatctttgaggacagtcatgtacttgagttgctggggtcccaattaatt 267  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  38067440 gaggaatctttgaggaaagtcatgtacttgagttgttggggtcccaattaatt 38067492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 38019184 - 38019432
Alignment:
Q  20 gcaggcagtgttgcagttgttgaagcattgaaagatcaaggaatatgcagatggaatcataccctaaagtcactccaaaatcatgtcaaaaacaatgtca 119  Q
    |||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||    
T  38019184 gcaggcagtgttgcagttgtggaagcattaaaggatcaaggaatatgcagatggaatcataccctaaagtcagttcaaaatcatgtcaaaaataatgtca 38019283  T
Q  120 ggtcgttttctcaagcaaagaaactttcatcgtcttcttcttcttctgctatggctcttaattctaatagacaac---aacataaggcagagcaatcaga 216  Q
    | ||||||||||||||||| ||||||||||| ||||| |||||||||||||||| |  |||| |||| | |||||   || | || ||| || |||||||    
T  38019284 gatcgttttctcaagcaaaaaaactttcatcttcttcctcttcttctgctatggtttctaatgctaacaaacaacaaaaagagaaagcaaaggaatcaga 38019383  T
Q  217 ggaatctttgaggacagtcatgtacttgagttgctggggtcccaattaa 265  Q
     ||||||||||||| |||||||||||||||||| |||||||| ||||||    
T  38019384 agaatctttgaggaaagtcatgtacttgagttgttggggtcctaattaa 38019432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 38028256 - 38028503
Alignment:
Q  18 cagcaggcagtgttgcagttgttgaagcattgaaagatcaaggaatatgcagatggaatcataccctaaagtcactccaaaatcatgtcaaaaacaatgt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | ||||||||||| |||||||||||    
T  38028256 cagcaggcagtgttgcagttgttgaagcattgaaagatcaaggaatatgcagatggaatcatacactaaaatcagttcaaaatcatgttaaaaacaatgt 38028355  T
Q  118 caggtcgttttctcaagcaaagaaactttcatcgtcttcttcttcttctgctatggctcttaa---ttctaatagacaacaacataaggcagagcaatca 214  Q
    ||| || ||||||||||||||||| ||||||   || ||||| ||||||||||||| |  |||   |||||| ||||||  | | ||| || ||||||||    
T  38028356 cagatcattttctcaagcaaagaagctttca---tcctcttcctcttctgctatggtttctaattcttctaagagacaaagagagaagacaaagcaatca 38028452  T
Q  215 gaggaatctttgaggacagtcatgtacttgagttgctggggtcccaattaa 265  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  38028453 gaggaatctttgaggaaagtcatgtacttgagttgttggggtcccaattaa 38028503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 401 - 440
Target Start/End: Original strand, 38045315 - 38045354
Alignment:
Q  401 aaattcaggattattctaactatgctttgtattacctatg 440  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  38045315 aaattcaggattattctaactatgctttgtattacctatg 38045354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 207 - 261
Target Start/End: Original strand, 38022059 - 38022113
Alignment:
Q  207 agcaatcagaggaatctttgaggacagtcatgtacttgagttgctggggtcccaa 261  Q
    |||| ||||||||||||||||| || ||||||| |||||||||||||||||||||    
T  38022059 agcagtcagaggaatctttgagaactgtcatgttcttgagttgctggggtcccaa 38022113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 207 - 261
Target Start/End: Original strand, 38046593 - 38046647
Alignment:
Q  207 agcaatcagaggaatctttgaggacagtcatgtacttgagttgctggggtcccaa 261  Q
    |||||||||||||||||||||| |||||||||||||| || || |||||||||||    
T  38046593 agcaatcagaggaatctttgagaacagtcatgtacttaagctgttggggtcccaa 38046647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 38003630 - 38003685
Alignment:
Q  213 cagaggaatctttgaggacagtcatgtacttgagttgctggggtcccaattaatta 268  Q
    ||||||| ||||||||||| |||||||||||||| || ||||||||||||| ||||    
T  38003630 cagaggagtctttgaggactgtcatgtacttgagctgttggggtcccaattgatta 38003685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 38031881 - 38031936
Alignment:
Q  213 cagaggaatctttgaggacagtcatgtacttgagttgctggggtcccaattaatta 268  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||||| |||| ||||    
T  38031881 cagaggagtctttgaggactgtcatgtacttgagctgctggggtcctaattgatta 38031936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 261
Target Start/End: Original strand, 38033963 - 38034009
Alignment:
Q  215 gaggaatctttgaggacagtcatgtacttgagttgctggggtcccaa 261  Q
    |||||||||||||| || ||||||| |||||||||||||||||||||    
T  38033963 gaggaatctttgagaacggtcatgttcttgagttgctggggtcccaa 38034009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 38033801 - 38033850
Alignment:
Q  26 agtgttgcagttgttgaagcattgaaagatcaaggaatatgcagatggaa 75  Q
    ||||||| |||||| || || |||||||||||||||||||||||||||||    
T  38033801 agtgttggagttgtggaggctttgaaagatcaaggaatatgcagatggaa 38033850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 258
Target Start/End: Original strand, 38069108 - 38069155
Alignment:
Q  211 atcagaggaatctttgaggacagtcatgtacttgagttgctggggtcc 258  Q
    |||||||||||||||||| |||||||||||||| || || ||||||||    
T  38069108 atcagaggaatctttgagaacagtcatgtacttaagctgttggggtcc 38069155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 38043179 - 38043220
Alignment:
Q  340 ttgaaagagattaatgtaaattatgatgaattgatgaagata 381  Q
    |||||||| ||| ||||||||||||||||||| |||||||||    
T  38043179 ttgaaagatattgatgtaaattatgatgaattaatgaagata 38043220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 38067526 - 38067567
Alignment:
Q  340 ttgaaagagattaatgtaaattatgatgaattgatgaagata 381  Q
    |||||||| ||| ||||||||||||||||||| |||||||||    
T  38067526 ttgaaagatattgatgtaaattatgatgaattaatgaagata 38067567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 42403947 - 42404008
Alignment:
Q  209 caatcagaggaatctttgaggacagtcatgtacttgagttgctggggtcccaattaattagag 271  Q
    |||||||||| ||||| ||| | |||||||||||| |||| ||||||||||||||||||||||    
T  42403947 caatcagagggatcttagagaaaagtcatgtacttcagtt-ctggggtcccaattaattagag 42404008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 42403806 - 42403888
Alignment:
Q  58 aggaatatgcagatggaatcataccctaaagtcactccaaaatcatgtcaaaaacaatgtcaggtcgttttctcaagcaaagaaactttca 148  Q
    |||||||||||||||||||||||| ||||||||  | |||||||        |||||| |||  | |||||||||||||||||||||||||    
T  42403806 aggaatatgcagatggaatcatacactaaagtcggttcaaaatc--------aacaatatcaaattgttttctcaagcaaagaaactttca 42403888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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