View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3455_high_9 (Length: 432)

Name: NF3455_high_9
Description: NF3455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3455_high_9
NF3455_high_9
[»] chr2 (16 HSPs)
chr2 (120-415)||(31902092-31902387)
chr2 (120-414)||(18681173-18681478)
chr2 (120-212)||(12793612-12793704)
chr2 (301-386)||(29043993-29044078)
chr2 (120-212)||(915334-915426)
chr2 (326-415)||(9926520-9926607)
chr2 (320-415)||(6173897-6173993)
chr2 (355-394)||(13337590-13337629)
chr2 (355-391)||(10173284-10173320)
chr2 (358-394)||(22884816-22884852)
chr2 (355-391)||(37770355-37770391)
chr2 (355-394)||(4975085-4975124)
chr2 (355-394)||(4992993-4993032)
chr2 (286-376)||(915159-915248)
chr2 (354-394)||(4472282-4472322)
chr2 (358-394)||(27740331-27740367)
[»] chr1 (17 HSPs)
chr1 (120-415)||(4651887-4652188)
chr1 (120-212)||(2988000-2988092)
chr1 (317-413)||(37582405-37582501)
chr1 (326-412)||(2987806-2987892)
chr1 (120-177)||(35250192-35250249)
chr1 (325-419)||(11839527-11839622)
chr1 (353-389)||(32863253-32863289)
chr1 (355-394)||(9313042-9313081)
chr1 (355-394)||(376508-376547)
chr1 (339-394)||(16149100-16149155)
chr1 (345-395)||(29938935-29938986)
chr1 (355-394)||(34775212-34775251)
chr1 (355-394)||(52278622-52278661)
chr1 (353-394)||(50588974-50589016)
chr1 (238-319)||(11839455-11839536)
chr1 (354-394)||(19598989-19599030)
chr1 (355-387)||(27102522-27102554)
[»] chr7 (6 HSPs)
chr7 (120-415)||(38485663-38485966)
chr7 (144-415)||(9349841-9350113)
chr7 (120-277)||(46133091-46133249)
chr7 (355-394)||(3478689-3478728)
chr7 (355-394)||(42532961-42533000)
chr7 (318-390)||(27028465-27028538)
[»] chr3 (13 HSPs)
chr3 (129-412)||(30935060-30935353)
chr3 (275-410)||(1652561-1652696)
chr3 (296-415)||(7966746-7966864)
chr3 (355-394)||(4171084-4171123)
chr3 (342-391)||(32010114-32010163)
chr3 (129-189)||(1652790-1652850)
chr3 (355-387)||(14893270-14893302)
chr3 (311-387)||(38489082-38489160)
chr3 (363-394)||(47946049-47946080)
chr3 (355-394)||(50518791-50518830)
chr3 (326-375)||(22948347-22948397)
chr3 (334-387)||(22948434-22948488)
chr3 (354-391)||(25594213-25594250)
[»] chr8 (6 HSPs)
chr8 (130-415)||(30235796-30236090)
chr8 (120-415)||(35062565-35062860)
chr8 (120-387)||(10552375-10552641)
chr8 (329-414)||(5214988-5215073)
chr8 (135-386)||(32945407-32945662)
chr8 (280-332)||(41791017-41791069)
[»] chr5 (7 HSPs)
chr5 (126-337)||(36979029-36979245)
chr5 (122-414)||(31721787-31722070)
chr5 (311-394)||(31742460-31742543)
chr5 (355-394)||(13953950-13953989)
chr5 (316-407)||(24436129-24436220)
chr5 (355-394)||(26405250-26405289)
chr5 (355-387)||(30097673-30097705)
[»] chr4 (12 HSPs)
chr4 (280-394)||(43373793-43373907)
chr4 (318-390)||(43077270-43077342)
chr4 (120-212)||(43373975-43374067)
chr4 (130-212)||(19432160-19432242)
chr4 (280-415)||(19432304-19432439)
chr4 (355-386)||(28967215-28967246)
chr4 (301-414)||(35800729-35800842)
chr4 (355-393)||(41117671-41117709)
chr4 (252-361)||(24739938-24740047)
chr4 (302-394)||(35336856-35336949)
chr4 (120-189)||(35800597-35800666)
chr4 (354-394)||(39420738-39420778)
[»] chr6 (9 HSPs)
chr6 (280-394)||(9224201-9224312)
chr6 (120-211)||(12794212-12794303)
chr6 (317-394)||(6946871-6946949)
chr6 (318-394)||(26534433-26534508)
chr6 (257-411)||(27774844-27774991)
chr6 (296-394)||(12794398-12794496)
chr6 (123-212)||(26215899-26215989)
chr6 (357-394)||(17278164-17278201)
chr6 (345-394)||(5746966-5747014)


Alignment Details
Target: chr2 (Bit Score: 161; Significance: 1e-85; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 120 - 415
Target Start/End: Complemental strand, 31902387 - 31902092
Alignment:
Q  120 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttaccatgtgt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||| | ||||    
T  31902387 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtgactcagtgttggtgttgaggacttggttctcttttacaaggtgt 31902288  T
Q  220 tcgattagtagtagcgacgagtgttttggatgttg-tctttcggtggttggttagtatagaagtcagttttaggggatgatatttatttttatgggagtt 318  Q
    ||| |||||||| |||||||||||||  ||||| | | ||||  |||||||||||||||| ||||||||||| ||| |||| |||||||| ||  |||||    
T  31902287 tcggttagtagtggcgacgagtgtttcagatgtcgttttttcactggttggttagtataggagtcagttttatgggttgatgtttattttgat-agagtt 31902189  T
Q  319 gtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttgatttgtactttctgtaacac 415  Q
    |||||||| ||||||||||||| ||||| ||| |||||||||  ||||| |||||||  |||||||||| ||| |||||||||||||||||||||||    
T  31902188 gtccttattggtgttgatcgcagggttgccttggttggtgttagttttcgggtgttctacctatatacggcgctttgatttgtactttctgtaacac 31902092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 120 - 414
Target Start/End: Original strand, 18681173 - 18681478
Alignment:
Q  120 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttaccatg-tg 218  Q
    |||||||  ||||| | |||||||||||||||||||||||||| |||||||||||||||   |||||||| |||||||| ||||||||||||| | | ||    
T  18681173 aggttgcacggtggtgaaagctgaatgatctttagagaaggagctcttcggatgtggctcaatgttggtgatgaggactaggttctcttttacaagggtg 18681272  T
Q  219 ttcgatt------agtagtagcgacgagtgttttggatgttgtctttcg----gtggttggttagtatagaagtcagttttaggggatgatatttatttt 308  Q
    |||  ||      ||| || |||||||||||||||||||| || |||      ||||||||| ||||||| ||||||||||||||| |||| ||||||||    
T  18681273 ttcttttgaggtgagtggtggcgacgagtgttttggatgtcgtgttttttttagtggttggtaagtataggagtcagttttagggggtgatgtttatttt 18681372  T
Q  309 tatgggagttgtccttatgggtgttgatcgca-aggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttgatttgtactttc 407  Q
       ||| ||||| ||||||||||||||| ||| ||||| |||||||| || ||| ||||| ||||||||||||||||||||| ||||  |||||||||||    
T  18681373 agagggtgttgttcttatgggtgttgattgcagaggtt-tctttgttagtatttgttttcgggtgttccgcctatatacgacaccttagtttgtactttc 18681471  T
Q  408 tgtaaca 414  Q
    |||||||    
T  18681472 tgtaaca 18681478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 120 - 212
Target Start/End: Complemental strand, 12793704 - 12793612
Alignment:
Q  120 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttac 212  Q
    |||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| | |  ||||||||||||    
T  12793704 aggttgtgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtggctcggtgttggtgatgagaagtaagttctcttttac 12793612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 301 - 386
Target Start/End: Complemental strand, 29044078 - 29043993
Alignment:
Q  301 tttatttttatgggagttgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatac 386  Q
    ||||||||  |||| | ||| ||| ||||||||||||||| || ||||||||||||| ||| ||||||||||||||||||||||||    
T  29044078 tttattttggtgggtgatgtacttttgggtgttgatcgcaggggtgtctttgttggtttttgttttcaggtgttccgcctatatac 29043993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 120 - 212
Target Start/End: Complemental strand, 915426 - 915334
Alignment:
Q  120 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttac 212  Q
    |||||||| ||||| ||||||| |||||| || ||| |||||||||||||||||| |||  ||||||||| |||||| | |||||||| ||||    
T  915426 aggttgcgcggtggtggaagctcaatgattttaagaaaaggagttcttcggatgttgctcagtgttggtgatgaggattgggttctctattac 915334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 326 - 415
Target Start/End: Original strand, 9926520 - 9926607
Alignment:
Q  326 tgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttgatttgtactttctgtaacac 415  Q
    ||||||||||| ||| ||| || |||||||||||||||||||  |||||||| |||||||||  ||||| ||||||||||| ||||||||    
T  9926520 tgggtgttgatggcagggt-gtatttgttggtgtttattttcgagtgttccgtctatatacggagcctt-atttgtactttttgtaacac 9926607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 415
Target Start/End: Complemental strand, 6173993 - 6173897
Alignment:
Q  320 tccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttga-tttgtactttctgtaacac 415  Q
    |||||||||||| |||||||| || ||||| | ||||||||| ||||  |||||||| ||||||||||| | ||| | ||||||||||| |||||||    
T  6173993 tccttatgggtgctgatcgcaggggtgtctcttttggtgtttgtttttgggtgttccacctatatacgatgtctttagtttgtactttccgtaacac 6173897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 394
Target Start/End: Original strand, 13337590 - 13337629
Alignment:
Q  355 ggtgtttattttcaggtgttccgcctatatacgacgcctt 394  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  13337590 ggtgtttattttcaggtgttccacctatatacgacgcctt 13337629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 391
Target Start/End: Complemental strand, 10173320 - 10173284
Alignment:
Q  355 ggtgtttattttcaggtgttccgcctatatacgacgc 391  Q
    |||||||||||||||||||||||||||||||| ||||    
T  10173320 ggtgtttattttcaggtgttccgcctatatacaacgc 10173284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 394
Target Start/End: Complemental strand, 22884852 - 22884816
Alignment:
Q  358 gtttattttcaggtgttccgcctatatacgacgcctt 394  Q
    |||||||||| ||||||||||||||||||||||||||    
T  22884852 gtttattttcgggtgttccgcctatatacgacgcctt 22884816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 391
Target Start/End: Complemental strand, 37770391 - 37770355
Alignment:
Q  355 ggtgtttattttcaggtgttccgcctatatacgacgc 391  Q
    ||||||||||||| |||||||||||||||||||||||    
T  37770391 ggtgtttattttcgggtgttccgcctatatacgacgc 37770355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 394
Target Start/End: Original strand, 4975085 - 4975124
Alignment:
Q  355 ggtgtttattttcaggtgttccgcctatatacgacgcctt 394  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  4975085 ggtgtttattttcgggtgttcagcctatatacgacgcctt 4975124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 394
Target Start/End: Original strand, 4992993 - 4993032
Alignment:
Q  355 ggtgtttattttcaggtgttccgcctatatacgacgcctt 394  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  4992993 ggtgtttattttcgggtgttcagcctatatacgacgcctt 4993032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 376
Target Start/End: Complemental strand, 915248 - 915159
Alignment:
Q  286 ttttaggggatgatatttatttttatgggagttgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttcc 376  Q
    |||||||||||||| ||||||||  |  | |||||||||||||||| ||| || | || |||||||||| |||||| ||||| ||||||||    
T  915248 ttttaggggatgatgtttattttggtaagtgttgtccttatgggtggtga-cgtaggggtgtctttgttagtgtttgttttcgggtgttcc 915159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 394
Target Start/End: Original strand, 4472282 - 4472322
Alignment:
Q  354 tggtgtttattttcaggtgttccgcctatatacgacgcctt 394  Q
    |||||||||||||| | ||||||| ||||||||||||||||    
T  4472282 tggtgtttattttcggatgttccgtctatatacgacgcctt 4472322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 394
Target Start/End: Original strand, 27740331 - 27740367
Alignment:
Q  358 gtttattttcaggtgttccgcctatatacgacgcctt 394  Q
    |||||||||| |||||||| |||||||||||||||||    
T  27740331 gtttattttcgggtgttccacctatatacgacgcctt 27740367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 120 - 415
Target Start/End: Original strand, 4651887 - 4652188
Alignment:
Q  120 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttacca-tgtg 218  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||   |||||||| || ||||||||||||||||||| |  |||    
T  4651887 aggttgcgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtggctcattgttggtgatggggacttggttctcttttacaagggtg 4651986  T
Q  219 ttc------gattagtagtagcgacgagtgttttggatgttg-tctttcggtggttggttagtatagaagtcagttttaggggatgatatttatttttat 311  Q
    |||      | | ||| || | |||||||||||| ||||| | | |||| ||||||||| | ||||| |||||||| ||  ||| ||| |||| |||  |    
T  4651987 ttcttttgaggtgagttgtggtgacgagtgttttagatgtcgttttttcagtggttggtaactataggagtcagttgta--ggaggatgtttagtttgtt 4652084  T
Q  312 gggagttgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttgatttgtactttctgta 411  Q
    ||| ||||| |||||||||||||||| || |||| | ||||||||||||| |||||||||||||||||||||||||  | |||  |||||||||||| ||    
T  4652085 gggtgttgtacttatgggtgttgatcacagggttttttttgttggtgtttgttttcaggtgttccgcctatatacggtgtcttagtttgtactttctata 4652184  T
Q  412 acac 415  Q
    ||||    
T  4652185 acac 4652188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 120 - 212
Target Start/End: Complemental strand, 2988092 - 2988000
Alignment:
Q  120 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttac 212  Q
    |||||| | ||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  2988092 aggttgtgcggtggtggaagctgaatgatctttagggaaggagttcttcggatgtggctcggtgttggtgatgaggacatggttctcttttac 2988000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 317 - 413
Target Start/End: Original strand, 37582405 - 37582501
Alignment:
Q  317 ttgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttgatttgtactttctgtaac 413  Q
    |||||||||||| ||||||||| |||| ||||||||||| ||||||||||| ||||||||| | ||||||| || |||  |||||||||||| ||||    
T  37582405 ttgtccttatggttgttgatcgtaagggtgtctttgttgatgtttattttcgggtgttccgtcaatatacgtcgtcttagtttgtactttctataac 37582501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 326 - 412
Target Start/End: Complemental strand, 2987892 - 2987806
Alignment:
Q  326 tgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttgatttgtactttctgtaa 412  Q
    ||||||||||| ||| || ||| ||||||||||||| ||||| | ||||||||||||||||| ||||||  ||||||||||| ||||    
T  2987892 tgggtgttgattgcaggggtgtttttgttggtgtttgttttcggatgttccgcctatatacggcgccttagtttgtactttcggtaa 2987806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 177
Target Start/End: Complemental strand, 35250249 - 35250192
Alignment:
Q  120 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggc 177  Q
    ||||| || ||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  35250249 aggttacgcggtggtggaagctgaatgatctttagagaaggagttcttcggaggtggc 35250192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 419
Target Start/End: Original strand, 11839527 - 11839622
Alignment:
Q  325 atgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttga-tttgtactttctgtaacacaggt 419  Q
    |||||||||||||||| |  ||| ||||||||  ||| ||||  |||||||||| | ||||||||||||| | |||||||||||||||||||||||    
T  11839527 atgggtgttgatcgcaggaatgtatttgttgggatttgtttttgggtgttccgcttttatacgacgcctttagtttgtactttctgtaacacaggt 11839622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 389
Target Start/End: Complemental strand, 32863289 - 32863253
Alignment:
Q  353 ttggtgtttattttcaggtgttccgcctatatacgac 389  Q
    |||||||||||||||||||||||||||||||||||||    
T  32863289 ttggtgtttattttcaggtgttccgcctatatacgac 32863253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 394
Target Start/End: Complemental strand, 9313081 - 9313042
Alignment:
Q  355 ggtgtttattttcaggtgttccgcctatatacgacgcctt 394  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  9313081 ggtgtttattttcgggtgttccgcctatatacgacgcctt 9313042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 394
Target Start/End: Complemental strand, 376547 - 376508
Alignment:
Q  355 ggtgtttattttcaggtgttccgcctatatacgacgcctt 394  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  376547 ggtgtttattttcaggtgttctgcctatatacggcgcctt 376508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 394
Target Start/End: Original strand, 16149100 - 16149155
Alignment:
Q  339 caaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgcctt 394  Q
    |||||||||||||   |||||||||||||  |||||||||||||||||| ||||||    
T  16149100 caaggttgtcttttagggtgtttattttcgcgtgttccgcctatatacggcgcctt 16149155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 395
Target Start/End: Complemental strand, 29938986 - 29938935
Alignment:
Q  345 tgtctttgttggtgttta-ttttcaggtgttccgcctatatacgacgccttg 395  Q
    |||||||||||||||||  |||| |||||||||||||||||| |||||||||    
T  29938986 tgtctttgttggtgttttgtttttaggtgttccgcctatatatgacgccttg 29938935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 394
Target Start/End: Original strand, 34775212 - 34775251
Alignment:
Q  355 ggtgtttattttcaggtgttccgcctatatacgacgcctt 394  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  34775212 ggtgtttattttcgggtgttccgcctatatacggcgcctt 34775251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 394
Target Start/End: Original strand, 52278622 - 52278661
Alignment:
Q  355 ggtgtttattttcaggtgttccgcctatatacgacgcctt 394  Q
    ||||||||||||||||||||||||||||||| | ||||||    
T  52278622 ggtgtttattttcaggtgttccgcctatatatggcgcctt 52278661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 394
Target Start/End: Complemental strand, 50589016 - 50588974
Alignment:
Q  353 ttggtgtttatt-ttcaggtgttccgcctatatacgacgcctt 394  Q
    |||||||||||| ||||||||||||||||||||||| ||||||    
T  50589016 ttggtgtttattcttcaggtgttccgcctatatacggcgcctt 50588974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 319
Target Start/End: Original strand, 11839455 - 11839536
Alignment:
Q  238 gagtgttttggatgttgtctttcggtggttggttagtatagaagtcagttttaggggatgatatttatttttatgggagttg 319  Q
    ||||||| |||||||||| |||  ||||| ||| ||| ||| | ||||||||||| |||||| |||||||| ||||| ||||    
T  11839455 gagtgttatggatgttgttttttagtggtcggtaagtttaggaatcagttttaggagatgatgtttattttgatgggtgttg 11839536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 394
Target Start/End: Original strand, 19598989 - 19599030
Alignment:
Q  354 tggtgttta-ttttcaggtgttccgcctatatacgacgcctt 394  Q
    ||||||||| ||||||||||||||||||||||||| ||||||    
T  19598989 tggtgtttacttttcaggtgttccgcctatatacggcgcctt 19599030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 387
Target Start/End: Original strand, 27102522 - 27102554
Alignment:
Q  355 ggtgtttattttcaggtgttccgcctatatacg 387  Q
    ||||||||||||| |||||||||||||||||||    
T  27102522 ggtgtttattttcgggtgttccgcctatatacg 27102554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 9e-43; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 120 - 415
Target Start/End: Original strand, 38485663 - 38485966
Alignment:
Q  120 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttac-catgtg 218  Q
    |||||||  ||||| |||||||||||||||||||||||||||||||||| |||||||||   |||||||| | ||||||||||||||||||||  | |||    
T  38485663 aggttgcacggtggtggaagctgaatgatctttagagaaggagttcttcagatgtggctcattgttggtgataaggacttggttctcttttacaaaggtg 38485762  T
Q  219 ttc------gattagtagtagcgacgagtgttttggatg----ttgtctttcggtggttggttagtatagaagtcagttttaggggatgatatttatttt 308  Q
    |||      | | ||| || |||||||||||||||||||    || | |||| ||||||||| | ||||| |||||||||||   || ||| |||| |||    
T  38485763 ttcttttgaggtgagttgtggcgacgagtgttttggatgtcatttttttttcagtggttggtaactataggagtcagtttta---gaagatgtttagttt 38485859  T
Q  309 tatgggagttgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttgatttgtactttct 408  Q
      |||  ||||| |||||||||||||||||||  ||| | ||||||||||||| ||||| |||||||||||||| |||||||||||  ||| ||||||||    
T  38485860 gctggatgttgtacttatgggtgttgatcgcagagttttttttgttggtgtttgttttcgggtgttccgcctatttacgacgccttagtttatactttct 38485959  T
Q  409 gtaacac 415  Q
    |||||||    
T  38485960 gtaacac 38485966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 144 - 415
Target Start/End: Original strand, 9349841 - 9350113
Alignment:
Q  144 atgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttaccatg-tgttcgatt------agtagtagcga 236  Q
    ||||| |||||||||| |||||||||||||||||| |||||||||| |||| | |  |||||||||||| | | |||||  ||      |||||| ||||    
T  9349841 atgatatttagagaagaagttcttcggatgtggctcggtgttggtgatgagtattgtgttctcttttacaagggtgttcttttggggtgagtagtggcga 9349940  T
Q  237 cgagtgttttggatgttgtctttcggtggttggttagtatagaagtcagttttaggggatgatatttatttttatgggagttgtccttatgggtgttgat 336  Q
    |||||||| ||||||| || ||   ||||||||| |||||||     |||||||||||  ||| ||||||||  |||| |||||||||||||| ||||||    
T  9349941 cgagtgttatggatgtcgttttctagtggttggtaagtatag----gagttttagggg--gatgtttattttggtgggtgttgtccttatgggggttgat 9350034  T
Q  337 cgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttgatttgtactttctgtaacac 415  Q
     ||| || |||||||||||||| || ||| ||||||||||||||||||||| ||||||| |||||||||| ||||||||    
T  9350035 tgcaggggtgtctttgttggtgattttttccaggtgttccgcctatatacggcgccttggtttgtactttttgtaacac 9350113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 120 - 277
Target Start/End: Complemental strand, 46133249 - 46133091
Alignment:
Q  120 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttaccatgtgt 219  Q
    |||||||||||||||||||||||| ||||||||||| || |||||||| ||||||| || |||||||||| ||| |||| ||||||||||||| | ||||    
T  46133249 aggttgcgtggtgggggaagctgattgatctttagataaagagttctttggatgtgactcggtgttggtgatgatgactgggttctcttttacaaggtgt 46133150  T
Q  220 tcgattagtagtagcgacgagtgttttggatgttg-tctttcggtggttggttagtata 277  Q
    | | | |||||| || ||||||||||||||||| | | |||| ||||||||||||||||    
T  46133149 ttggtgagtagtggcaacgagtgttttggatgtcgttttttcagtggttggttagtata 46133091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 394
Target Start/End: Original strand, 3478689 - 3478728
Alignment:
Q  355 ggtgtttattttcaggtgttccgcctatatacgacgcctt 394  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  3478689 ggtgtttattttcgggtgttccgcctatatacggcgcctt 3478728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 394
Target Start/End: Complemental strand, 42533000 - 42532961
Alignment:
Q  355 ggtgtttattttcaggtgttccgcctatatacgacgcctt 394  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  42533000 ggtgtttatttccaggtgttccgcctatatacggcgcctt 42532961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 390
Target Start/End: Original strand, 27028465 - 27028538
Alignment:
Q  318 tgtccttatgggtgttgatcgcaaggttgtctttgttggtg-tttattttcaggtgttccgcctatatacgacg 390  Q
    ||||||| ||||||||||||||| || ||||||| |  ||| ||| |||| ||||||||| |||||||||||||    
T  27028465 tgtccttttgggtgttgatcgcatggatgtctttatcagtgttttgtttttaggtgttccacctatatacgacg 27028538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 9e-43; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 129 - 412
Target Start/End: Complemental strand, 30935353 - 30935060
Alignment:
Q  129 ggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttacca-tgtgttc------ 221  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||  |||||||||||| |  ||||||          
T  30935353 ggtggtggaagctgaatgatctttagaaaaggagttcttcggatgtggctcggtgttggtgatgaggactgagttctcttttacaagggtgttcttttga 30935254  T
Q  222 gattagtagtagcgacgagtgttttggatgttgtcttt---cggtggttggttagtatagaagtcagttttaggggatgatatttatttttatgggagtt 318  Q
    | | |||||| |||||||||||| | ||||| || |||   |||||| |||| ||||||  ||||||||||||||| |||| ||||||||  |||  |||    
T  30935253 ggtgagtagtggcgacgagtgttatagatgtcgtttttttccggtggctggtaagtataagagtcagttttagggggtgatgtttattttggtggatgtt 30935154  T
Q  319 gtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttgatttgtactttctgtaa 412  Q
    |  |||| ||||||||||  || |||||||||||||||||||| ||||| |||||| ||| |||||||||| ||||  |||||| |||| ||||    
T  30935153 gctcttaagggtgttgattacagggttgtctttgttggtgtttgttttcgggtgtttcgcttatatacgacaccttagtttgtattttcagtaa 30935060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 275 - 410
Target Start/End: Complemental strand, 1652696 - 1652561
Alignment:
Q  275 atagaagtcagttttaggggatgatatttatttttatgggagttgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgtt 374  Q
    |||||||||||||||||||| |||| ||||||||  |||| |||||||||||| ||||||||||||||| ||||||||| |||||||| |||| ||||||    
T  1652696 atagaagtcagttttagggggtgatgtttattttggtgggtgttgtccttatgagtgttgatcgcaagggtgtctttgtgggtgttta-tttcgggtgtt 1652598  T
Q  375 ccgcctatatacgacgccttga-tttgtactttctgt 410  Q
    |||||||||||||||||||| | ||||||||||||||    
T  1652597 ccgcctatatacgacgcctttagtttgtactttctgt 1652561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 296 - 415
Target Start/End: Complemental strand, 7966864 - 7966746
Alignment:
Q  296 tgatatttatttttatgggagttgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttg 395  Q
    |||| |||||||| |||||||||||| |||||||||| |||||||| | |||||||||| |||||| ||||| ||||||||| ||||||||| |  |||     
T  7966864 tgatgtttattttgatgggagttgtctttatgggtgtggatcgcaaaggtgtctttgtttgtgtttgttttcgggtgttccgtctatatacggcatctt- 7966766  T
Q  396 atttgtactttctgtaacac 415  Q
    | ||||||||||||||||||    
T  7966765 aattgtactttctgtaacac 7966746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 394
Target Start/End: Original strand, 4171084 - 4171123
Alignment:
Q  355 ggtgtttattttcaggtgttccgcctatatacgacgcctt 394  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4171084 ggtgtttattttcaggtgttccgcctatatacgacgcctt 4171123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 32010114 - 32010163
Alignment:
Q  342 ggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgc 391  Q
    ||||||||||   ||||||||||||||||| |||||||||||||||||||    
T  32010114 ggttgtcttttaaggtgtttattttcaggtattccgcctatatacgacgc 32010163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 1652850 - 1652790
Alignment:
Q  129 ggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtg 189  Q
    ||||| ||||| ||||||||||||||| ||||||||| ||| || ||||| ||||||||||    
T  1652850 ggtggcggaagttgaatgatctttagaaaaggagttcctcgaatttggctcggtgttggtg 1652790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 387
Target Start/End: Original strand, 14893270 - 14893302
Alignment:
Q  355 ggtgtttattttcaggtgttccgcctatatacg 387  Q
    |||||||||||||||||||||||||||||||||    
T  14893270 ggtgtttattttcaggtgttccgcctatatacg 14893302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 387
Target Start/End: Original strand, 38489082 - 38489160
Alignment:
Q  311 tgggagttgtccttatgggtgttgatcgcaaggttgtctttgttgg--tgtttattttcaggtgttccgcctatatacg 387  Q
    |||| ||||| ||| ||||||||||||||| || ||||||||||||  | ||  ||| |||||||||||||||||||||    
T  38489082 tgggtgttgttcttttgggtgttgatcgcatggatgtctttgttgggattttcgtttacaggtgttccgcctatatacg 38489160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 394
Target Start/End: Original strand, 47946049 - 47946080
Alignment:
Q  363 ttttcaggtgttccgcctatatacgacgcctt 394  Q
    ||||||||||||||||||||||||||||||||    
T  47946049 ttttcaggtgttccgcctatatacgacgcctt 47946080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 394
Target Start/End: Complemental strand, 50518830 - 50518791
Alignment:
Q  355 ggtgtttattttcaggtgttccgcctatatacgacgcctt 394  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  50518830 ggtgtttattttcgggtgttccgcctatatacgacacctt 50518791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 375
Target Start/End: Complemental strand, 22948397 - 22948347
Alignment:
Q  326 tgggtgttgatcgcaaggttgtctttgttggtg-tttattttcaggtgttc 375  Q
    ||||||||||||||| || |||||||||||||| ||| |||||||||||||    
T  22948397 tgggtgttgatcgcatgggtgtctttgttggtgttttgttttcaggtgttc 22948347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 387
Target Start/End: Complemental strand, 22948488 - 22948434
Alignment:
Q  334 gatcgcaaggttgtctttgttggtgttta-ttttcaggtgttccgcctatatacg 387  Q
    ||||||| || |||||||||||||||||  |||||||||||||||| ||||||||    
T  22948488 gatcgcatgggtgtctttgttggtgttttgttttcaggtgttccgcatatatacg 22948434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 391
Target Start/End: Complemental strand, 25594250 - 25594213
Alignment:
Q  354 tggtgtttattttcaggtgttccgcctatatacgacgc 391  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  25594250 tggtgtttactttcgggtgttccgcctatatacgacgc 25594213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 4e-42; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 130 - 415
Target Start/End: Complemental strand, 30236090 - 30235796
Alignment:
Q  130 gtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttaccatg-tgttcgatt--- 225  Q
    |||| ||||||||| ||||||||||| ||| ||||||| ||||||| || ||||||||| ||||||||| | |||||| || | | | |||||| ||       
T  30236090 gtggtggaagctgattgatctttagaaaagaagttctttggatgtgactcggtgttggtattgaggactggtttctctcttgctagggtgttcgtttgtg 30235991  T
Q  226 ---agtagtagcgacgagtgttttggatgttgtct-ttcggtggttggttagtatagaagtcagttttaggggatgatatttatttttatgggagttgtc 321  Q
       |||||| |||| ||||||| ||||||| || | ||   |||| ||||| ||||| ||||||||||||||| |||| ||||||||  |||| ||||||    
T  30235990 gtgagtagtggcgatgagtgttatggatgtcgtttatttaatggtcggttaatataggagtcagttttagggggtgatgtttattttggtgggtgttgtc 30235891  T
Q  322 cttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttga-tttgtactttctgtaacac 415  Q
    ||| |||||||||||||||||| ||||||||||||||||| ||||| | |||||||||||||||||  ||||| | ||||||| |||||||||||    
T  30235890 cttttgggtgttgatcgcaagggtgtctttgttggtgtttgttttcggatgttccgcctatatacggagcctttagtttgtaccttctgtaacac 30235796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 120 - 415
Target Start/End: Original strand, 35062565 - 35062860
Alignment:
Q  120 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttacca-tgtg 218  Q
    |||||||| ||||| ||||| ||||||||||||||||||||||||||||||| |||||    |||||||| |||||||| ||||||||||||| |  |||    
T  35062565 aggttgcgcggtggtggaaggtgaatgatctttagagaaggagttcttcggaggtggcacaatgttggtgatgaggactgggttctcttttacaagggtg 35062664  T
Q  219 ttc------gattagtagtagcgacgagtgttttggatgttgtctttcggtggttggttagtatagaagtcagttttaggggatgatatttatttttatg 312  Q
    |||      | | |||||| |||||||||||| |||||||||| |||  ||||||||||||||||  |||||||||||||||| |   ||| ||||  ||    
T  35062665 ttctcttgaggtgagtagtggcgacgagtgttatggatgttgttttttagtggttggttagtatatgagtcagttttaggggagg--tttttttttggtg 35062762  T
Q  313 ggagttgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttgatttgtactttctgtaa 412  Q
     | | ||||||| ||||||||||||||| ||      |||||||||||| ||||| ||||||| | ||||||||| ||  || ||||||| |||||||||    
T  35062763 tgtgatgtccttttgggtgttgatcgcaggg-----gttgttggtgtttgttttcgggtgttctgtctatatacggcgtattaatttgtattttctgtaa 35062857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 120 - 387
Target Start/End: Original strand, 10552375 - 10552641
Alignment:
Q  120 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttacca-tgtg 218  Q
    ||||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||   ||||||| | |||||||| ||||||||||||| |  |||    
T  10552375 aggttgcgttgtggtggaagctgaatgatctttagagaagaagttcttcggaggtggcacagtgttggagatgaggactgggttctcttttacaagggtg 10552474  T
Q  219 ttc------gattagtagtagcgacgagtgttttggatgttgtctttcggtggttggttagtatagaagtcagttttaggggatgatatttatttttatg 312  Q
    |||      | | |||||| ||||||||| || ||||||| || |||  ||||||| ||||||||  ||||||||||||||||||   ||||||||  |     
T  10552475 ttcttttgaggtgagtagtggcgacgagttttatggatgtcgttttttagtggttgcttagtatatgagtcagttttaggggatg---tttattttggtt 10552571  T
Q  313 ggagttgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacg 387  Q
    || |||||||||| |||||||||| ||| ||      |||||||||||| ||||| | |||||||||||||||||    
T  10552572 ggtgttgtccttaagggtgttgattgcaggg-----gttgttggtgtttgttttcggatgttccgcctatatacg 10552641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 414
Target Start/End: Complemental strand, 5215073 - 5214988
Alignment:
Q  329 gtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttgatttgtactttctgtaaca 414  Q
    |||||||||| | || |||||||||| | |||| ||||| |||||| |||||||||||| ||||||  ||||||||||||||||||    
T  5215073 gtgttgatcgtaggggtgtctttgttagagtttgttttcgggtgtttcgcctatatacggcgccttagtttgtactttctgtaaca 5214988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 135 - 386
Target Start/End: Complemental strand, 32945662 - 32945407
Alignment:
Q  135 ggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttac-catgtgttc------gattag 227  Q
    ||||||||||||||||||||| ||| |||||||| |||||| || |||||||||| ||| |||| | |||| ||||||  | ||||||      | | ||    
T  32945662 ggaagctgaatgatctttagaaaagaagttcttcagatgtgactcggtgttggtgatgatgactggtttcttttttacaaaagtgttcttttgaggtgag 32945563  T
Q  228 tagtagcgacgagtgttttggatgttg-tctttcggtggttggttagtatagaagtcagttttaggggatgatatttatttttatgggagttg-tcctta 325  Q
    |||| |||| ||||||| ||||||| | |||||| |  || |||  |||||| ||||||||||| ||| |||| ||||||||  |||  |||| ||||||    
T  32945562 tagtggcgatgagtgttatggatgtcgttctttcag-cgtcggtaggtataggagtcagttttaagggctgatgtttattttggtggatgttgatcctta 32945464  T
Q  326 tgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatac 386  Q
    || ||||||||||||||| |||||| | |    ||| ||||| ||||||||||||||||||    
T  32945463 tgagtgttgatcgcaagggtgtcttaggt----tttgttttcgggtgttccgcctatatac 32945407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 332
Target Start/End: Complemental strand, 41791069 - 41791017
Alignment:
Q  280 agtcagttttaggggatgatatttatttttatgggagttgtccttatgggtgt 332  Q
    ||||||||||||||| |||| ||||||||  |||| |||||||||||| ||||    
T  41791069 agtcagttttagggggtgatgtttattttggtgggggttgtccttatgagtgt 41791017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 126 - 337
Target Start/End: Original strand, 36979029 - 36979245
Alignment:
Q  126 cgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttaccatgtgttcgatt 225  Q
    ||||||||| |||||||||||||| ||| |||| |||||||| ||||||||||||||||||||  | |||||| |||||||||||| || ||||| | |     
T  36979029 cgtggtgggagaagctgaatgatcattaaagaatgagttctttggatgtggcttggtgttggtaataaggactaggttctctttta-caggtgttaggtg 36979127  T
Q  226 agtagtagcgacgagtgttttggatgttg-tctttcggtggttggttagtatagaagtcagttt-----taggggatgatatttatttttatgggagttg 319  Q
    |||||| ||||| |||||||||||||||| | |||| ||||||||| ||||||  |||||||||     | ||||  ||| |||||||| ||||||||||    
T  36979128 agtagtggcgaccagtgttttggatgttgttttttcagtggttggtaagtataagagtcagtttgtgtgtggggggggatgtttattttgatgggagttg 36979227  T
Q  320 tccttatgggtgttgatc 337  Q
    ||||||||| ||||||||    
T  36979228 tccttatggatgttgatc 36979245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 122 - 414
Target Start/End: Original strand, 31721787 - 31722070
Alignment:
Q  122 gttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttaccatg----- 216  Q
    |||||| ||||| ||||| ||| |||||||||||||| |||||||| |||||||||| | ||||||||  |||||||  |||||||||||| | |         
T  31721787 gttgcgcggtggtggaagttgattgatctttagagaatgagttctttggatgtggctcgatgttggtgacgaggactgagttctcttttacaagggtgtt 31721886  T
Q  217 tgttcga--ttagtagtagcgacgagtgttttggatgttgtcttt-cggtggttggttagtatagaagtcagttttaggggatgatatttatttttatgg 313  Q
    | || ||  | |||||| |||||||||||| ||||||| || ||| | ||||||||| ||||||| ||||||||||||||  |||| ||||||||    |    
T  31721887 tttttgaggtgagtagtggcgacgagtgttatggatgtcgttttttcagtggttggtaagtataggagtcagttttaggg--tgatgtttatttt----g 31721980  T
Q  314 gagttgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttgatttgtactttctgtaac 413  Q
    |           |||||||||||| || || || ||||||| |||||| ||||| ||||||||| ||||||||| ||||||  |||||||||||||||||    
T  31721981 g-----------tgggtgttgatcacatgggtgcctttgttagtgtttgttttcgggtgttccgtctatatacggcgccttagtttgtactttctgtaac 31722069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 311 - 394
Target Start/End: Original strand, 31742460 - 31742543
Alignment:
Q  311 tgggagttgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgcctt 394  Q
    |||| ||||||||||||||| ||||||||||||  |||||||  ||||||| ||||| ||||||||||||||||||| ||||||    
T  31742460 tgggtgttgtccttatgggttttgatcgcaagggagtctttgcaggtgtttgttttcgggtgttccgcctatatacggcgcctt 31742543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 394
Target Start/End: Complemental strand, 13953989 - 13953950
Alignment:
Q  355 ggtgtttattttcaggtgttccgcctatatacgacgcctt 394  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  13953989 ggtgtttattttcaggtgttccgcctatatacggcgcctt 13953950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 407
Target Start/End: Original strand, 24436129 - 24436220
Alignment:
Q  316 gttgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttgatttgtactttc 407  Q
    |||||||||||| |||||||||| | |  |||||||||| |||||| ||||| | ||||||| ||||||| |||| |||  |||||||||||    
T  24436129 gttgtccttatgagtgttgatcgtaggagtgtctttgttagtgtttgttttcggatgttccgactatatatgacgtcttagtttgtactttc 24436220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 394
Target Start/End: Complemental strand, 26405289 - 26405250
Alignment:
Q  355 ggtgtttattttcaggtgttccgcctatatacgacgcctt 394  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  26405289 ggtgtttattttcgggtgttccgactatatacgacgcctt 26405250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 387
Target Start/End: Original strand, 30097673 - 30097705
Alignment:
Q  355 ggtgtttattttcaggtgttccgcctatatacg 387  Q
    ||||||||||||| |||||||||||||||||||    
T  30097673 ggtgtttattttcgggtgttccgcctatatacg 30097705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 280 - 394
Target Start/End: Complemental strand, 43373907 - 43373793
Alignment:
Q  280 agtcagttttaggggatgatatttatttttatgggagttgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcc 379  Q
    ||||||||||||||| |||| ||||||||  |||| |||||||||||| ||||||||| || || ||||||||||||  ||| ||||| |||||| ||||    
T  43373907 agtcagttttagggggtgatgtttattttggtgggtgttgtccttatgtgtgttgatcacatgggtgtctttgttgggttttgttttcgggtgtttcgcc 43373808  T
Q  380 tatatacgacgcctt 394  Q
    ||||||| |||||||    
T  43373807 tatatacaacgcctt 43373793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 318 - 390
Target Start/End: Original strand, 43077270 - 43077342
Alignment:
Q  318 tgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacg 390  Q
    ||||||| || |||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||    
T  43077270 tgtccttttgagtgttgatcgcaggggtgtctttgttggtgtttattttcaggtgttctgcctatatacgacg 43077342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 120 - 212
Target Start/End: Complemental strand, 43374067 - 43373975
Alignment:
Q  120 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttac 212  Q
    |||||||| ||||| ||||||||| ||||||||||| || ||||||||| || ||| || |||||||||| ||| |||||| |||||||||||    
T  43374067 aggttgcgcggtggtggaagctgattgatctttagaaaatgagttcttcagaggtgactcggtgttggtgatgatgacttgtttctcttttac 43373975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 19432160 - 19432242
Alignment:
Q  130 gtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttac 212  Q
    |||| |||||||||||||| ||| ||  ||||||| ||||| |||| ||||||||||||| ||||||||   |||||||||||    
T  19432160 gtggtggaagctgaatgatatttggaagaggagttattcggttgtgacttggtgttggtgatgaggactgatttctcttttac 19432242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 415
Target Start/End: Original strand, 19432304 - 19432439
Alignment:
Q  280 agtcagttttaggggatgatatttatttttatgggagttgtccttatgggtgttgatcgca-aggttgtctttgttggtgtttattttcaggtgttccgc 378  Q
    ||||||||||||||| |||| ||||||||  |||| ||| ||| ||||||||||||| ||| |||  | |||||||||  ||| ||||| | |||||||     
T  19432304 agtcagttttagggggtgatctttattttggtgggtgttatccctatgggtgttgatggcagagg--ggctttgttgggttttgttttcggatgttccgt 19432401  T
Q  379 ctatatacgacgcc-ttgatttgtactttctgtaacac 415  Q
    ||||||||| |||| ||  ||||||| |||||||||||    
T  19432402 ctatatacggcgccttttgtttgtaccttctgtaacac 19432439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 386
Target Start/End: Original strand, 28967215 - 28967246
Alignment:
Q  355 ggtgtttattttcaggtgttccgcctatatac 386  Q
    ||||||||||||||||||||||||||||||||    
T  28967215 ggtgtttattttcaggtgttccgcctatatac 28967246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 414
Target Start/End: Original strand, 35800729 - 35800842
Alignment:
Q  301 tttatttttatgggagttgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgcc-ttgattt 399  Q
    |||||||| ||||| ||| || |||||||||||||||||| || | | || |||||||||| ||||  ||||||||| ||||||||  |||| ||  |||    
T  35800729 tttattttgatgggtgttttc-ttatgggtgttgatcgcatgggtattttcgttggtgtttgtttttcggtgttccgtctatatacagcgccgttatttt 35800827  T
Q  400 gtactttctgtaaca 414  Q
    ||||||||| |||||    
T  35800828 gtactttctttaaca 35800842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 393
Target Start/End: Complemental strand, 41117709 - 41117671
Alignment:
Q  355 ggtgtttattttcaggtgttccgcctatatacgacgcct 393  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  41117709 ggtgtttattttcgggtgttccgcctatatacgatgcct 41117671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 361
Target Start/End: Complemental strand, 24740047 - 24739938
Alignment:
Q  252 ttgtctttcggtggttggttagtatagaagtcagttttaggggatgatatttatttttatgggagttgtccttatgggtgttgatcgcaaggttgtcttt 351  Q
    |||| |||| ||||| | ||| |||| |||||| ||||||| |  ||| ||||||||  |||| ||| |||||||| ||| ||||||||||| ||| |||    
T  24740047 ttgtttttcagtggtcgattaatatacaagtcatttttaggtggggatgtttattttagtgggtgttatccttatgagtggtgatcgcaagggtgttttt 24739948  T
Q  352 gttggtgttt 361  Q
     |||||||||    
T  24739947 attggtgttt 24739938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 394
Target Start/End: Original strand, 35336856 - 35336949
Alignment:
Q  302 ttatttttatgggagttgtccttatgggtgttgatcgcaaggttgtctttgttggtg-tttattttcaggtgttccgcctatatacgacgcctt 394  Q
    |||||||  |||| |||||||||| | |||||||| |||    |||||||||||||| ||||||||| | ||||||| ||||||||| ||||||    
T  35336856 ttattttggtgggtgttgtccttacgagtgttgattgcatatgtgtctttgttggtgttttattttcggatgttccgtctatatacggcgcctt 35336949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 35800597 - 35800666
Alignment:
Q  120 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtg 189  Q
    ||||| || ||||| |||| ||||||||||||| |  ||||||||||| |||||||||| | ||||||||    
T  35800597 aggtttcgcggtggtggaacctgaatgatctttggtaaaggagttctttggatgtggctcgttgttggtg 35800666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 394
Target Start/End: Complemental strand, 39420778 - 39420738
Alignment:
Q  354 tggtgtttattttcaggtgttccgcctatatacgacgcctt 394  Q
    ||||||| |||||| ||||||||||||||||||||| ||||    
T  39420778 tggtgttcattttcgggtgttccgcctatatacgacacctt 39420738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 280 - 394
Target Start/End: Original strand, 9224201 - 9224312
Alignment:
Q  280 agtcagttttaggggatgatatttatttttatgggagttgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcc 379  Q
    |||||||||||||||  ||| |||||||| |||||  |   ||||||||| |||||||||| || ||||||||||||||||||||||| ||||||||  |    
T  9224201 agtcagttttagggg--gatgtttattttgatgggtttatcccttatggg-gttgatcgcagggatgtctttgttggtgtttattttcgggtgttccttc 9224297  T
Q  380 tatatacgacgcctt 394  Q
    |||||||||| ||||    
T  9224298 tatatacgacacctt 9224312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 120 - 211
Target Start/End: Original strand, 12794212 - 12794303
Alignment:
Q  120 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctctttta 211  Q
    |||||||| ||||| |||||| || ||||||||||| ||||| |||||| |||||| || |||||||| |||||||||| | ||||||||||    
T  12794212 aggttgcgcggtggtggaagcagattgatctttagaaaaggatttcttcagatgtgactcggtgttggggttgaggactggtttctctttta 12794303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 317 - 394
Target Start/End: Complemental strand, 6946949 - 6946871
Alignment:
Q  317 ttgtccttatgggtgttgatcgcaaggttgtctttgttggtg-tttattttcaggtgttccgcctatatacgacgcctt 394  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||| |||||  |||||||  ||||||||| ||||||    
T  6946949 ttgtccttatgggtgttgatcgcaagggtgtctttgttggtgttttgttttcgagtgttccatctatatacggcgcctt 6946871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 394
Target Start/End: Complemental strand, 26534508 - 26534433
Alignment:
Q  318 tgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgcctt 394  Q
    ||||||| |||||||| || ||| || ||||||||||||| ||  ||||||||||||||||||||||||||||||||    
T  26534508 tgtccttttgggtgtttattgcaggggtgtctttgttggtattg-ttttcaggtgttccgcctatatacgacgcctt 26534433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 257 - 411
Target Start/End: Original strand, 27774844 - 27774991
Alignment:
Q  257 tttcggtggttggttagtatagaagtcagtttt-aggggatgatatttatttttatgggagttgtccttatgggtgttgatcgcaaggttgtctttgttg 355  Q
    |||| ||||||||| | |||||||||||||||| ||||||||   ||||||||  |||| |||||     ||||||||||||| | |  |||||||||||    
T  27774844 tttcagtggttggtaaatatagaagtcagtttttaggggatg---tttattttggtgggtgttgt-----tgggtgttgatcgtaggagtgtctttgttg 27774935  T
Q  356 gtgtttattttcaggtgttccgcctatatacgacgccttgatttgtactttctgta 411  Q
    |||||| ||||  | ||||||  ||||||||||||||||  |||||||||| ||||    
T  27774936 gtgtttgtttttggatgttccatctatatacgacgccttagtttgtactttttgta 27774991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 394
Target Start/End: Original strand, 12794398 - 12794496
Alignment:
Q  296 tgatatttatttttatgggagttgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgcctt 394  Q
    |||| ||||||||  |||  ||||||||| |||||||||||||||    ||||||||||||||||  ||||| | ||||||| ||||||||| ||||||    
T  12794398 tgatgtttattttggtggatgttgtccttttgggtgttgatcgcagatgtgtctttgttggtgttcgttttcggatgttccgtctatatacggcgcctt 12794496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 212
Target Start/End: Complemental strand, 26215989 - 26215899
Alignment:
Q  123 ttgcgtggtgggggaagctgaatgatctttagagaaggagtt-cttcggatgtggcttggtgttggtgttgaggacttggttctcttttac 212  Q
    ||||| ||||| ||||||||| |||||||| || |||||||| ||||  ||||||||  ||||||||| |||||||| | |||||||||||    
T  26215989 ttgcgcggtggtggaagctgattgatctttggaaaaggagtttcttcaaatgtggctcagtgttggtgatgaggactagtttctcttttac 26215899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 394
Target Start/End: Complemental strand, 17278201 - 17278164
Alignment:
Q  357 tgtttattttcaggtgttccgcctatatacgacgcctt 394  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  17278201 tgtttattttcgggtgttccgcctatatacgacgcctt 17278164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 394
Target Start/End: Original strand, 5746966 - 5747014
Alignment:
Q  345 tgtctttgttggtgtttattttcaggtgttccgcctatatacgacgcctt 394  Q
    ||||||| ||| |||| ||||| |||||||||||||||||||||||||||    
T  5746966 tgtctttattgatgttcatttt-aggtgttccgcctatatacgacgcctt 5747014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University