View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3455_low_12 (Length: 411)
Name: NF3455_low_12
Description: NF3455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3455_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 364; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 401
Target Start/End: Original strand, 10981800 - 10982183
Alignment:
| Q |
18 |
tatagtgcctcacaagtaacaaagaaactcgagatcccgacttacttttactacacttcaggtgctatctttgtagccactttccttcattttccaattg |
117 |
Q |
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| T |
10981800 |
tatagtgcctcacaagtaaccaagaaagtcgagatcccgacttacttttattacacttcaggtgctatctttgtagccactttccttcattttccaattg |
10981899 |
T |
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| Q |
118 |
tttatgaaaatgctacaaaacctattaaggatcttcatatgcctcttcaaattccagggttaccaaagagtctttcaacagatgattaccctgacggatt |
217 |
Q |
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| T |
10981900 |
tttatgaaaatgctacaaaacctattaaggatcttcatatgcctcttcaaattccagggttaccaaagagtctttcaacagatgattaccctgacggatt |
10981999 |
T |
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| Q |
218 |
caatgattctatttctgagaataaagtgttacaagatatgcttgattccatgaaaactacgagggaatgtgatgggattatagtgaacacttttgatggt |
317 |
Q |
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| T |
10982000 |
caatgattctatttctgagaataaagtgttacaagatatgcttgattccatgaaaactacgagggaatgtgatgggattatagtgaacacttttgatggt |
10982099 |
T |
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| Q |
318 |
attgaaggaagagcaattaaagcattgaatgaaggattatttattcctaatggtattccatccattttctgtactggacctttg |
401 |
Q |
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| T |
10982100 |
attgaaggaagagcaattaaagctttgaatgaaggattatttattcctgatggtattccatccattttctgtactggacctttg |
10982183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 401
Target Start/End: Original strand, 11002033 - 11002413
Alignment:
| Q |
18 |
tatagtgcctcacaagtaacaaagaaactcgagatcccgacttacttttactacacttcaggtgctatctttgtagccactttccttcattttccaattg |
117 |
Q |
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| T |
11002033 |
tatagtgcctcacaagtcaccaccaaccttgaaattcctacttacttttactatacttcaggtgctaccattctttccactttcctttactttccaacca |
11002132 |
T |
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| Q |
118 |
tttatgaaaatgctacaaaacctattaaggatcttcatatgcctcttcaaattccagggttaccaaagagtctttcaacagatgattaccctgacggatt |
217 |
Q |
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| T |
11002133 |
ttcaccaaaaagctacaaaacccatcaaggatcttcatatgcctcttaaaattcccgggttaccaaagaacttttcgacagacgattaccccgatgaagc |
11002232 |
T |
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| Q |
218 |
caatgattctatttctgagaataaagtgttacaaga-tatgcttgattccatgaaaactacgagggaatgtgatgggattatagtgaacacttttgatgg |
316 |
Q |
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| T |
11002233 |
taagga------ttctgagagtaaag-gttgcaagattttgcttgattcggcgaaaacaatgagggaatgtgctgggattattgtgaacacttttgatgc |
11002325 |
T |
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| Q |
317 |
tattgaaggaagagcaattaaagcattgaatgaaggattatttattcctaatgg---tattccatccattttctgtactggacctttg |
401 |
Q |
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| T |
11002326 |
tattgaagaaaaagctattaaaggtttgaatgaaggggtatgtgttcctgatggaacaactccatccattttttgtattggacctttg |
11002413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 57 - 211
Target Start/End: Original strand, 10967916 - 10968070
Alignment:
| Q |
57 |
acttacttttactacacttcaggtgctatctttgtagccactttccttcattttccaattgtttatgaaaatgctacaaaacctattaaggatcttcata |
156 |
Q |
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| T |
10967916 |
acttacttttacttcacttcaggtgctattgttttagcccttttccttcactatccaactattcaccaaaatgctacaaaacccattaaggatctccata |
10968015 |
T |
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| Q |
157 |
tgcctcttcaaattccagggttaccaaagagtctttcaacagatgattaccctga |
211 |
Q |
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| T |
10968016 |
cgcctcttcgaattcctgggttaccaaaaaatatttcaacagatgattaccctga |
10968070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 270 - 397
Target Start/End: Original strand, 10968099 - 10968229
Alignment:
| Q |
270 |
aaaactacgagggaatgtgatgggattatagtgaacacttttgatggtattgaaggaagagcaattaaagcattgaatgaaggattatttattcctaatg |
369 |
Q |
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||||||| |||| ||||||||||| |||| |||||||||||||||| |||||| |||| ||| | |||||| |||||||||||||||| ||||||| ||| |
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| T |
10968099 |
aaaactatgaggcaatgtgatggggttattgtgaacacttttgatgctattgagggaaaagctaataaagctttgaatgaaggattatatattcctgatg |
10968198 |
T |
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| Q |
370 |
g---tattccatccattttctgtactggacc |
397 |
Q |
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| T |
10968199 |
gaactactccatccattttttgtattggacc |
10968229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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