View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3455_low_13 (Length: 409)

Name: NF3455_low_13
Description: NF3455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3455_low_13
NF3455_low_13
[»] chr4 (8 HSPs)
chr4 (1-391)||(55665175-55665561)
chr4 (75-385)||(54861853-54862163)
chr4 (65-391)||(55635390-55635721)
chr4 (1-385)||(54627178-54627559)
chr4 (1-188)||(52985475-52985656)
chr4 (94-202)||(3671698-3671806)
chr4 (1-381)||(55658960-55659339)
chr4 (81-232)||(50191733-50191881)
[»] chr8 (1 HSPs)
chr8 (65-342)||(9889724-9889999)
[»] chr2 (2 HSPs)
chr2 (89-262)||(13401706-13401876)
chr2 (320-391)||(13401568-13401639)
[»] chr7 (1 HSPs)
chr7 (134-206)||(46154649-46154721)
[»] chr1 (2 HSPs)
chr1 (130-206)||(37310521-37310597)
chr1 (130-203)||(22514480-22514553)


Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 55665175 - 55665561
Alignment:
Q  1 acatgcgcatacatttagagccaaaataatcaatcaataattgaaacaaattattggtgcactggggatagaaaaattggtacttactgaagaagctcca 100  Q
    |||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  55665175 acatgcgcatacatttagagccaaaataatc----aataattgaaacaaattattggtgcaccagggatagaaaaattggtacttactgaagaagctcca 55665270  T
Q  101 ccagtctgccacatacacctgcctcgatcacagcttggattttgtcatttgttccatcagaaagatatgagaatgcccaacatgcatcagtcaggacttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  55665271 ccagtctgccacatacacctgcctcgatcacagcttggattttgtcatttgttccatcagaaagatatgagaatgcccaacatgcatcactcaggacttc 55665370  T
Q  201 ttcatcgtcattggacaaaatcaaacgctcaatagagggcagcgctggcctcacctgtccataaaaaacctagtattaatacagagacaaatgtcttgca 300  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  55665371 ttcatcgtcattggacaaaatcaaacgctcaagagagggcagcgctggcctcacctgtccataaaaaacctagtattaatacacagacaaatgtcttgca 55665470  T
Q  301 ggttcaattttaatttaacaaaaacaacaactacctgctcaattgggggtggtggcttgcctttgcaaaagcttgacagggtccacgtggc 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55665471 ggttcaattttaatttaacaaaaacaacaactacctgctcaattgggggtggtggcttgcctttgcaaaagcttgacagggtccacgtggc 55665561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 75 - 385
Target Start/End: Original strand, 54861853 - 54862163
Alignment:
Q  75 aattggtacttactgaagaagctccaccagtctgccacatacacctgcctcgatcacagcttggattttgtcatttgttccatcagaaagatatgagaat 174  Q
    ||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||| |    
T  54861853 aattggtacttacagaaggagctgcaccagtctgccacatacacctgcctcgatcaccgcttggatattgtcatttgttccatcagaaagatacgagagt 54861952  T
Q  175 gcccaacatgcatcagtcaggacttcttcatcgtcattggacaaaatcaaacgctcaatagagggcagcgctggcctcacctgtccataaaaaacctagt 274  Q
    ||||| |||||||| || |||||||||   ||||| ||||| |||| |||| |||  | || ||| ||||||||||||| |||||||| ||||  |||||    
T  54861953 gcccaccatgcatcggttaggacttct---tcgtctttggaaaaaaccaaatgcttgagagcgggaagcgctggcctcatctgtccatcaaaattctagt 54862049  T
Q  275 attaatacagagacaaa---tgtcttgcaggttcaattttaatttaacaaaaacaacaactacctgctcaattgggggtggtggcttgcctttgcaaaag 371  Q
    ||||||||| ||| |||    |||||| ||||||| ||||||||||| ||||||||||| ||||||||||| ||||||| ||||||||||  ||||||||    
T  54862050 attaatacacagataaaggtcgtcttgtaggttcagttttaatttaataaaaacaacaattacctgctcaagtgggggttgtggcttgcccctgcaaaag 54862149  T
Q  372 cttgacagggtcca 385  Q
     |||||| ||||||    
T  54862150 tttgacaaggtcca 54862163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 65 - 391
Target Start/End: Complemental strand, 55635721 - 55635390
Alignment:
Q  65 gggatagaaaaattggtacttactgaagaagctccaccagtctgccacatacacctgcctcgatcacagcttggattttgtcatttgttccatcagaaag 164  Q
    ||||||||| ||||||| ||||| |||| ||||||||||||||||||||||||||||| | |||||| |||||||||||||||||  ||||||||||||     
T  55635721 gggatagaagaattggtgcttacagaaggagctccaccagtctgccacatacacctgcgttgatcactgcttggattttgtcattcattccatcagaaat 55635622  T
Q  165 a-tatgagaatgcccaacatgcatcagtcaggacttcttcatcgtcattggacaaaatcaaacgctcaatagagggcagcgctggcctcacctgtccata 263  Q
    | ||||||| |||||| |||||||| | |||||||||||||   |||||||| |||||||||||||| | || ||| || ||||||||||||||| ||||    
T  55635621 attatgagagtgcccagcatgcatctgacaggacttcttca---tcattggaaaaaatcaaacgctcgagagtgggaagtgctggcctcacctgtacata 55635525  T
Q  264 aaa---aacctagtattaatacagagacaaatg---tcttgcaggttca-attttaatttaacaaaaacaacaactacctgctcaattgggggtggtggc 356  Q
    |||   || |||||||||||||| | | ||| |   ||||||||||| |  ||||||||||||||||||||||| ||||||||||| | ||||| |||||    
T  55635524 aaaaataatctagtattaatacacaaataaaggtcttcttgcaggtttagtttttaatttaacaaaaacaacaattacctgctcaaataggggttgtggc 55635425  T
Q  357 ttgcctttgcaaaagcttgacagggtccacgtggc 391  Q
    || ||  |||||||| |||||| |||||| |||||    
T  55635424 tttcccctgcaaaagtttgacaaggtccatgtggc 55635390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 54627559 - 54627178
Alignment:
Q  1 acatgcgcatacatttagagccaaaataatcaatcaataattgaaacaaattattggtgcactggggatagaaaaattggtacttactgaagaagctcca 100  Q
    |||||| |||||||||||||||||||||||||||    | ||| || | |  ||||||  ||  |||||| || ||||||||||||| |||| |  | ||    
T  54627559 acatgcacatacatttagagccaaaataatcaat----acttgcaatagaacattggttgacgagggatataagaattggtacttacagaaggatttgca 54627464  T
Q  101 ccagtctgccacatacacctgcctcgatcacagcttggattttgtcatttgttccatcagaaagatatgagaatgcccaacatgcatcagtcaggacttc 200  Q
    ||||||| ||||||||||||||||||||||| |||||||| || ||| ||||||||||||||||||| |||| |||||||||||| || ||||||||  |    
T  54627463 ccagtctaccacatacacctgcctcgatcaccgcttggatattatcacttgttccatcagaaagatacgagagtgcccaacatgcctcggtcaggacgac 54627364  T
Q  201 ttcatcgtcattggacaaaatcaaacgctcaatagagggcagcgctggcctcacctgtccataaaaaacctagtattaatacagagacaaatg---tctt 297  Q
    |||||| |   |||| |||| ||||| ||  | || ||| ||||||| |||||||||||||| ||||  |||||||||||||| ||| ||| |   |||     
T  54627363 ttcatctt---tggaaaaaaccaaacacttgagagcgggaagcgctgacctcacctgtccatcaaaattctagtattaatacacagataaaggtcatctc 54627267  T
Q  298 gcaggttcaattttaatttaac-aaaaacaacaactacctgctcaattgggggtggtggcttgcctttgcaaaagcttgacagggtcca 385  Q
      ||||||| ||||| |||||| ||||||||||||||||||||||| || |||| ||||||||||  |||||||| ||||||| |||||    
T  54627266 agaggttcagttttattttaactaaaaacaacaactacctgctcaagtgcgggttgtggcttgcccctgcaaaagtttgacagcgtcca 54627178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 52985475 - 52985656
Alignment:
Q  1 acatgcgcatacatttagagccaaaataatcaatcaataattgaaacaaattattggtgcactggggatagaaaaattggtacttactgaagaagctcca 100  Q
    |||||| |||||||||||||||||||||||||||    ||||| ||||||  ||||||  ||  ||||| ||||| ||||||||||| |||| |||||||    
T  52985475 acatgcacatacatttagagccaaaataatcaat----aattgcaacaaaa-attggttgaccagggatcgaaaa-ttggtacttacagaagtagctcca 52985568  T
Q  101 ccagtctgccacatacacctgcctcgatcacagcttggattttgtcatttgttccatcagaaagatatgagaatgcccaacatgcatc 188  Q
    ||||||||||||||| ||||||||| |||||  |||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  52985569 ccagtctgccacatatacctgcctcaatcacctcttggattatgtcatttgttccatcagaaagatatgagattgcccaacatgcatc 52985656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 3671698 - 3671806
Alignment:
Q  94 agctccaccagtctgccacatacacctgcctcgatcacagcttggattttgtcatttgttccatcagaaagatatgagaatgcccaacatgcatcagtca 193  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||| | ||    
T  3671698 agctccaccagtctgccacaaacacctgcctcgatcaccgcttggattttgtcatttgttccatcagaaagatatgagagtgcccagcatgcatctgcca 3671797  T
Q  194 ggacttctt 202  Q
     ||||||||    
T  3671798 tgacttctt 3671806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 55658960 - 55659339
Alignment:
Q  1 acatgcgcatacatttagagccaaaataatcaatcaataattgaaacaaattattggtgcactggggatagaaaaattggtacttactgaagaagctcca 100  Q
    |||||||| || |||||||||||||||||||||     ||||| |||| |  ||||||  ||  |||||| || | |||||||||||  ||| ||||| |    
T  55658960 acatgcgcgtagatttagagccaaaataatcaac----aattgcaacagaaaattggttgaccagggatataagatttggtacttacaaaaggagctcta 55659055  T
Q  101 ccagtctgccacatacacctgcctcgatcacagcttggattttgtcatttgttccatc---agaaagatatgagaatgcccaacatgcatcagtcaggac 197  Q
    | |||||  ||||||  || |||||||| || |||||||||| ||||||||  ||||    |||||||||||||| |||||| ||||| || |||| |||    
T  55659056 ctagtctatcacatatgccagcctcgattaccgcttggatttcgtcatttgaaccatatttagaaagatatgagagtgcccagcatgcttctgtcacgac 55659155  T
Q  198 ttcttcatcgtcattggacaaaatcaaacgctcaatagagggcagcgctggcctcacctgtccataaaaaacctagtattaatacag-agacaaatg--t 294  Q
    |||||||||   |||||| ||||||||||||   |  |  || || ||| ||||||||| ||||| ||||  | |||||||||| |  | | ||||   |    
T  55659156 ttcttcatc---attggaaaaaatcaaacgcctgagggtaggaagtgcttgcctcacctatccatcaaaattcaagtattaataaaccaaataaattctt 55659252  T
Q  295 cttgcaggttcaattttaatttaacaaaaacaacaactacctgctcaattgggggtggtggcttgcctttgcaaaagcttgacaggg 381  Q
    ||| ||  |||| ||||||||||||||| ||||||||||||||||||| |||||||||||| || ||| |||||||| |||||||||    
T  55659253 cttacatattcagttttaatttaacaaacacaacaactacctgctcaaatgggggtggtggttttcctctgcaaaagtttgacaggg 55659339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 81 - 232
Target Start/End: Original strand, 50191733 - 50191881
Alignment:
Q  81 tacttactgaagaagctccaccagtctgccacatacacctgcctcgatcacagcttggattttgtcatttgttccatcagaaagatatgagaatgcccaa 180  Q
    |||| ||| ||| |||| ||||| || ||||||||||||||| || || |   ||||||||||||||||||| |||||||| || ||||| || |||||     
T  50191733 tactcacttaaggagctgcaccaatcggccacatacacctgcgtcaataatttcttggattttgtcatttgtgccatcagataggtatgataaagcccag 50191832  T
Q  181 catgcatcagtcaggacttcttcatcgtcattggacaaaatcaaacgctcaa 232  Q
    || ||||| ||||| ||||||||||| ||    |||||||||||||||||||    
T  50191833 caggcatctgtcagaacttcttcatcctc---cgacaaaatcaaacgctcaa 50191881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 65 - 342
Target Start/End: Complemental strand, 9889999 - 9889724
Alignment:
Q  65 gggatagaaaaattggtacttactgaagaagctccaccagtctgccacatacacctgcctcgatcacagcttggattttgtcatttgttccatcagaaag 164  Q
    ||||||||| |||||||||||||  ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9889999 gggatagaagaattggtacttacaaaaggagctccaccagtctgccacatacacctgcctcgatcaccgcttggattttgtcatttgttccatcagaaag 9889900  T
Q  165 atatgagaatgcccaacatgcatcagtcaggacttcttcatcgtcattggacaaaatcaaacgctcaatagagggcagcgctggcctcacctgtccataa 264  Q
    |||||||| |||||| |||||||| | |||||||||||||   |||||||| ||||||||| |||| | || ||| || |||||||||| ||||||||||    
T  9889899 atatgagagtgcccagcatgcatctgccaggacttcttca---tcattggaaaaaatcaaaagctcgagagtgggaagtgctggcctcaactgtccataa 9889803  T
Q  265 aaaacctagtattaatacagagacaaatgtc--ttgcaggttcaattttaatttaacaaaaacaacaactacctgctcaa 342  Q
    |||| |||||||||||||| | | ||| |||  ||  ||| |   |||||||| ||||||||||||||||||||||||||    
T  9889802 aaaatctagtattaatacacaaataaaggtctttttaagggt-ttttttaattcaacaaaaacaacaactacctgctcaa 9889724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 89 - 262
Target Start/End: Complemental strand, 13401876 - 13401706
Alignment:
Q  89 gaagaagctccaccagtctgccacatacacctgcctcgatcacagcttggattttgtcatttgttccatcagaaagatatgagaatgcccaacatgcatc 188  Q
    |||| |||| ||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||    
T  13401876 gaaggagctgcactagtctgccacatacacctgcctcaatcaccgcttggattttgtcatttgttccatcagaaagataagagagtgcccagcatgcatc 13401777  T
Q  189 agtcaggacttcttcatcgtcattggacaaaatcaaacgctcaatagagggcagcgctggcctcacctgtccat 262  Q
     |||||||||||||||   ||||| || |||| ||||||||||| ||  || || |||||||||||||||||||    
T  13401776 tgtcaggacttcttca---tcatttgaaaaaaccaaacgctcaagagccggaagtgctggcctcacctgtccat 13401706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 391
Target Start/End: Complemental strand, 13401639 - 13401568
Alignment:
Q  320 aaaaacaacaactacctgctcaattgggggtggtggcttgcctttgcaaaagcttgacagggtccacgtggc 391  Q
    |||||||||||||||||| |||| ||| ||| ||||||||||  |||||||| ||||||| ||||| |||||    
T  13401639 aaaaacaacaactacctgatcaaatggaggttgtggcttgcccctgcaaaagtttgacagagtccatgtggc 13401568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 46154649 - 46154721
Alignment:
Q  134 cttggattttgtcatttgttccatcagaaagatatgagaatgcccaacatgcatcagtcaggacttcttcatc 206  Q
    |||| |||||||||||||  ||||||||||||||||| | ||||||||| |||||||||| ||||||||||||    
T  46154649 cttgaattttgtcatttgcaccatcagaaagatatgaaagtgcccaacaggcatcagtcaagacttcttcatc 46154721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 130 - 206
Target Start/End: Original strand, 37310521 - 37310597
Alignment:
Q  130 acagcttggattttgtcatttgttccatcagaaagatatgagaatgcccaacatgcatcagtcaggacttcttcatc 206  Q
    |||||||| ||||| || ||||| ||||||||||||||||| | |||||| || |||||||||| ||||||||||||    
T  37310521 acagcttgaattttatcgtttgtaccatcagaaagatatgatagtgcccagcaggcatcagtcaagacttcttcatc 37310597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 22514480 - 22514553
Alignment:
Q  130 acagcttggattttgtcatttgttccatcagaaagatatgagaatgcccaacatgcatcagtcaggacttcttc 203  Q
    |||||||| ||||| |||||||| ||||||||||||||||| | |||||| || |||||||| | |||||||||    
T  22514480 acagcttgaattttttcatttgtaccatcagaaagatatgatagtgcccagcaggcatcagtgacgacttcttc 22514553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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