View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3455_low_14 (Length: 392)
Name: NF3455_low_14
Description: NF3455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3455_low_14 |
 | |
|
| [»] scaffold0119 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0119 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 377
Target Start/End: Complemental strand, 13764 - 13406
Alignment:
| Q |
19 |
gcagctacactagcacgtagtgaatcaaaagtgtacagcatggatgttgnnnnnnnnggagaagaagaaaataatgaaaaagattatacacaaagagcac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13764 |
gcagctacactagcacgtagtgaatcaaaagtgtacagcatggatgttgaaaaaaaaggagaagaagaaaatgatgaaaaagattatacacaaagagcac |
13665 |
T |
|
| Q |
119 |
aatggcttagggcagctgttttaggtgctaatgatggtttactctcaacagcatccctaatgatgggtgttggtgccgttacaaaagatgttaagacaat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13664 |
aatggcttagggcagctgttttaggtgctaatgatggtttactctcaacagcatccctaatgatgggtgttggtgccgttacaaaagatgttaagacaat |
13565 |
T |
|
| Q |
219 |
gattctaactggaattgctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattgaatttgcacaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13564 |
gattctaactggaattgctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattgaatttgcacaa |
13465 |
T |
|
| Q |
319 |
atgaaaagacaaggaaacatttctcaaaaagataaattgcctaacccttattatgctgc |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13464 |
atgaaaagacaaggaaacatttctcaaaaagataaattgcctaacccttattatgctgc |
13406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 377
Target Start/End: Complemental strand, 19444 - 19086
Alignment:
| Q |
19 |
gcagctacactagcacgtagtgaatcaaaagtgtacagcatggatgttgnnnnnnnnggagaagaagaaaataatgaaaaagattatacacaaagagcac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19444 |
gcagctacactagcacgtagtgaatcaaaagtgtacagcatggatgttgaaaaaaaaggagaagaagaaaatgatgaaaaagattatacacaaagagcac |
19345 |
T |
|
| Q |
119 |
aatggcttagggcagctgttttaggtgctaatgatggtttactctcaacagcatccctaatgatgggtgttggtgccgttacaaaagatgttaagacaat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19344 |
aatggcttagggcagctgttttaggtgctaatgatggtttactctcaacagcatccctaatgatgggtgttggtgccgttacaaaagatgttaagacaat |
19245 |
T |
|
| Q |
219 |
gattctaactggaattgctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattgaatttgcacaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19244 |
gattctaactggaattgctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattgaatttgcacaa |
19145 |
T |
|
| Q |
319 |
atgaaaagacaaggaaacatttctcaaaaagataaattgcctaacccttattatgctgc |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19144 |
atgaaaagacaaggaaacatttctcaaaaagataaattgcctaacccttattatgctgc |
19086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 19 - 377
Target Start/End: Original strand, 1292830 - 1293188
Alignment:
| Q |
19 |
gcagctacactagcacgtagtgaatcaaaagtgtacagcatggatgttgnnnnnnnnggagaagaagaaaataatgaaaaagattatacacaaagagcac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1292830 |
gcagctacactagcacgtagtgaatcaaaagtgtacaacatggatgttgaaaaaaaaggagaagaagaaaatgatgaaaaagattatacacaaagagcac |
1292929 |
T |
|
| Q |
119 |
aatggcttagggcagctgttttaggtgctaatgatggtttactctcaacagcatccctaatgatgggtgttggtgccgttacaaaagatgttaagacaat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1292930 |
aatggcttagggcagctgttttaggtgctaatgatggtttactctcaacagcatccctaatgatgggtgttggtgccgttacaaaagatgttaagacaat |
1293029 |
T |
|
| Q |
219 |
gattctaactggaattgctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattgaatttgcacaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1293030 |
gattctaactggaattgctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattgaatttgcacaa |
1293129 |
T |
|
| Q |
319 |
atgaaaagacaaggaaacatttctcaaaaagataaattgcctaacccttattatgctgc |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1293130 |
atgaaaagacaaggaaacatttctcaaaaagataaattgcctaacccttattatgctgc |
1293188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 110 - 327
Target Start/End: Original strand, 12281540 - 12281757
Alignment:
| Q |
110 |
aaagagcacaatggcttagggcagctgttttaggtgctaatgatggtttactctcaacagcatccctaatgatgggtgttggtgccgttacaaaagatgt |
209 |
Q |
| |
|
||||| |||||||||| || |||||||||||||| ||||| ||||| ||| |||| ||||| || |||||||||||||| ||||| || | |||| | |
|
|
| T |
12281540 |
aaagatcacaatggctaagagcagctgttttaggcgctaacgatggattagtctctacagcttcgctaatgatgggtgtcggtgcagtcaagcaagacat |
12281639 |
T |
|
| Q |
210 |
taagacaatgattctaactggaattgctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattgaa |
309 |
Q |
| |
|
|| ||||||| |||| || |||| || | ||||| |||||||| ||||||||||| ||||||||||| ||||| || ||||||| || |||||| |
|
|
| T |
12281640 |
caaagcaatgatcttaaccggttttgccgggttggtagccggtgcatgcagcatggcaataggtgaatttgtctctgtgtactcacaattagacattgaa |
12281739 |
T |
|
| Q |
310 |
tttgcacaaatgaaaaga |
327 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
12281740 |
gttgctcaaatgaaaaga |
12281757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 110 - 327
Target Start/End: Complemental strand, 44635765 - 44635548
Alignment:
| Q |
110 |
aaagagcacaatggcttagggcagctgttttaggtgctaatgatggtttactctcaacagcatccctaatgatgggtgttggtgccgttacaaaagatgt |
209 |
Q |
| |
|
||||| |||||||||| | || || |||||||| ||||||||||| ||| | ||||||||||| |||||||||||||| || || || | | |||| | |
|
|
| T |
44635765 |
aaagatcacaatggctacgtgccgcagttttaggagctaatgatggattagtttcaacagcatcactaatgatgggtgtaggagcagtgaaacaagacat |
44635666 |
T |
|
| Q |
210 |
taagacaatgattctaactggaattgctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattgaa |
309 |
Q |
| |
|
|| | ||||| | | || ||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||| ||| |||||| |
|
|
| T |
44635665 |
aaaagccatgatcttgtcaggttttgctggacttgtagctggtgcatgtagcatggcaataggtgagtttgtatctgtttattcacaacttgacattgaa |
44635566 |
T |
|
| Q |
310 |
tttgcacaaatgaaaaga |
327 |
Q |
| |
|
|||| ||| | |||||| |
|
|
| T |
44635565 |
attgctcaattaaaaaga |
44635548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 308
Target Start/End: Original strand, 37742345 - 37742418
Alignment:
| Q |
235 |
gctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattga |
308 |
Q |
| |
|
|||||| | ||||||||||| |||||||||||||||||||| ||||| ||||| ||| | |||||||| ||||| |
|
|
| T |
37742345 |
gctggtttagtagctggtgcttgtagcatggcaattggtgagtttgtttctgtttatactcaatatgacattga |
37742418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 308
Target Start/End: Original strand, 37749415 - 37749488
Alignment:
| Q |
235 |
gctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattga |
308 |
Q |
| |
|
|||||| | ||||||||||| |||||||||||||||||||| ||||| ||||| ||| | |||||||| ||||| |
|
|
| T |
37749415 |
gctggtttagtagctggtgcttgtagcatggcaattggtgagtttgtttctgtttatactcaatatgacattga |
37749488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 308
Target Start/End: Complemental strand, 37752373 - 37752300
Alignment:
| Q |
235 |
gctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattga |
308 |
Q |
| |
|
|||||| | ||||| ||||| |||||||||||||||||||| ||||| ||||| ||| | |||||||| ||||| |
|
|
| T |
37752373 |
gctggtttagtagcaggtgcttgtagcatggcaattggtgagtttgtttctgtttatactcaatatgacattga |
37752300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University