View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3455_low_17 (Length: 366)
Name: NF3455_low_17
Description: NF3455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3455_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 350
Target Start/End: Original strand, 5894000 - 5894332
Alignment:
| Q |
18 |
aggatggtcatcaaggagacaaacatgggtttattccttttgggatggggaggagggcttgtcctgggtcgggcttagccctgagaactttgagcttgac |
117 |
Q |
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| T |
5894000 |
aggatggtcatcaaggagacaaacatgggtttattccttttgggatggggaggagggcttgtcctgggtcgggcttagccctgagaactttgagcttgac |
5894099 |
T |
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| Q |
118 |
tttgggatctttgattcaatgctttgaatggaaaagtattggcaaggaaggagttgatatgactgaaggacgtggaactctgttgcctatggccattcca |
217 |
Q |
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| T |
5894100 |
tttgggatctttgattcaatgctttgaatggaaaaggattggcaaggaaggagttgatatgactgaaggacgtggaactctgttgcctatggccattcca |
5894199 |
T |
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| Q |
218 |
ttggaggcacaatgcaaagctcgtccaataatcaataagcttttctcttaataattgtgtgtttgctaaagattcaaattgataagaaccttatgaataa |
317 |
Q |
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| T |
5894200 |
ttggaggcacaatgcaaagctcgtccaataatcaataagcttttctcttaataattgtgtgtttgctaaagattcaaattgataagaaccttatgaataa |
5894299 |
T |
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| Q |
318 |
tgttgtagaagttgaaaaaatattatttggtgt |
350 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
5894300 |
tgttgtagaagttgaaaaaatattatttggtgt |
5894332 |
T |
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